Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00424 ATGGCGGATCAGTGCTCCAATGAAGGGTCGAGTAGTGGAAATATTTCGGCAGAATGTTCAGATTCAACTGTTCAACTCAATATCAAGACTCTAGATTCCCGCATCTTCAGTTTTCAAGTGGACAAAAATATGCCTGTTTCATTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCGGTTAGCCAGCAACGACTGATATTTAGAGGAAAAGTCTTAAAGGATGAGCACGTTCTTTCTGAGTATCATGTTGAAAATGGGCATACGTTGCATTTAGTTGAAAGACAACCGAATCAGTCACAGTCACAGGCTTCTGGTCCGAGTTCTGGTGAGCCAACAACCGGTACGAGTGGGAACCGAGGAAATGATATAGGCTCAGGAGCTCCTCGTAATCGTGTTGGGCAAATTTCACATAGTGTTGTTCTTGGAACATTTAATGTGGGGGAACAAGGTGAAGGCATTGTTCACGACCTCACTCGGGTTATTGGGCATGTTTTAAATTCTATTGGAAATGGTGGCCAGAGCACAATTAGTGGTCCTAATGCCATACAAACTTCCTCAGCTCTCCCAGGGAATGAAACTGAAGGAATGCATGCTGGAAATCAGAACCTAGCAGGAAATCAGACACCATCTGGACAGACGTTTCCTGGTCCTACATTCCAATCTGTGTCTCATGTTGTTCAGATTCCTGTGGCAGCAGGAGCCATACCCCTTCCTTCTCTCAATGCACCAATTCCTCATTCATTGAATACACTGTCTGAGTTTATGAATCGCATGGAACAGACACTAACACAAAATGGTTATGAGCCAAATCTTTCATCAGCTAACCCTGTGGATCAGCGAGTGGAATTGCCTTCTAATGCACAAGGGTTGCCGACACTTGAAGCATTAAGCTCTGTTTTGCATCGTGCAGAACAGTTGCTTGGTGGTCAAGCTGTTGCTGCACTATCTCATATTGCAGGGCACTTGGAAAGAGAAGGAACTTCTGCTGATCTACGTACAAGGGGTCAAATACAGTCAGAGTCGATGCAAATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTTCTTGAACTTGGCCGAACAATGTTGACACTGCGAATGGGACAGTCTTCTGCAGAATCTGTTGTTAATGCTGGACCAGCAGTTTACATTTCTCCATCGGGGCCAAATCCTATCATGGTGCAGCCTTTTCCACTTCAGACAAGCTCCCTCTTTGGTGGTCCAGTTCCCTCCTCAACTTCTGCAACTTTAGGCACCATTGGTATTGGAAATGCTCCTAGGAACGTGAACATTCATATACATGCTGGCACCTCTCTTGCACCAATTGTTTCAGCAATTGGTTCTAGGCCAAATAATGGAGAAGGGACGAGAAGTGAACACCGTAATGAGCCTGGCTCTGGTGATTCAGGTTCAACACGGGTATTACCGGTTAGGGTTTCAGCAACTATCCCATCACACCCTCCTGGCATTGGAGTGTCTAGTAGCACACAAACTGGGTTCGGTGTTTCTACTTCACAGCCACCTTCTGATTCTGCTTCGTTGTCGTCTGTTTTAGCTGAAATCAATTCTCGCCTTAGAAATGTTGTTGGTAATATGCAAGGAGATAACACAGTTCCATCAGGTGATTACCTTTTTATTGTTTCATTATATGTAGTCTTTGATATATTAGTATTGAATTCCGAAACACTTTTTTGCATCCATTCAGGTCAAATGGAATCAAACAGCAGGGGCTTGTCTTCTGGATCTGAATCAGGACCTGTTACAGGAAATGAACGAGATACCATGGAGATAAATGGCATTGGTGCTGCTGCCAGTGCATCCTCGGTTGGCTCTACTTCTGAAAGTGAAATACAGAAGCTCCAAACTGAGGCCGTCCAAACCTCAAGTAATGATGAGAGAGATGTTTTGGTTGACAAATTTGTTTCAAGTTCTTCCAACCAAGATTTACAAAGTTGTTCTAGTGGAGAAACAATAATAGGACCAGAAAAAGAACAAGATGTGACTGAACCTGTCAAAGCTGCTCCACTAGGATTGGGTGTGAGTGGTTTAGAGCGCAAGAGGCGGACTAGACTTCAACCTCCAGGAAGTAAAGGTTCTGATGATGGATCAACTAGTTCTTCTGTCAATCAAAATCAGCAAACCAGAACAGGCAGTCAACATATATTGCAAAGTCTTGCAAGTCATGGATCTGCTGTAAATTCAAGAAATGCGAATGGGCCATCCCAGCTGCCCTTGCCCTCCAGTGATCGCCCAATCGATGTGGCTGGTTTAATGTCTCAAGTTTTACATAGTCCTGCTCTGAATGGTTTGTTGGAAGGAGTTTCACAGCAAACCGGAGTTGACTCACCTGATGGCTTGAGGAATATGTTGCAGCAGTTCACGCAAAGCCCACAGATGATGAACACGGTCAATCAAATTGTCCAACATGTTGGCAGTCAGGATGTGGGGAATATGTTTGCTGGAATGGGAGGAGGGCAGGGTGGTGGTGGTATTGACTTTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCTCAAGCCCTTGGTGGGGCAAATCCTCCCTCAATATTCCCTGCTGAAGAAACAGAACTCCGTGCACCCCACCAAGATGAATTTTCTGAATATGGAAGTTTACAGCATGAGCTTGAACCACTGGCCGAAAGGATTGAGCACCTGAGACGCCCCACAGATGTTTTCCGTGCGGTAGCTGAAAATGCTGTCCAGCTATCTGGCAGTGGAAGTGCTTCTAATGATCTTCTGGATGAGTTATGCAGCAATGAGAGTCTTGCAAGGGAATATGTCGATATGTTGCGACGTGATGCTAGTCAACTGCTCGAGGGACATTCTGAGCCGGAGAAATTGTAA 2868 0.4477 MADQCSNEGSSSGNISAECSDSTVQLNIKTLDSRIFSFQVDKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQSQSQASGPSSGEPTTGTSGNRGNDIGSGAPRNRVGQISHSVVLGTFNVGEQGEGIVHDLTRVIGHVLNSIGNGGQSTISGPNAIQTSSALPGNETEGMHAGNQNLAGNQTPSGQTFPGPTFQSVSHVVQIPVAAGAIPLPSLNAPIPHSLNTLSEFMNRMEQTLTQNGYEPNLSSANPVDQRVELPSNAQGLPTLEALSSVLHRAEQLLGGQAVAALSHIAGHLEREGTSADLRTRGQIQSESMQIGLAMQHLGALLLELGRTMLTLRMGQSSAESVVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGPVPSSTSATLGTIGIGNAPRNVNIHIHAGTSLAPIVSAIGSRPNNGEGTRSEHRNEPGSGDSGSTRVLPVRVSATIPSHPPGIGVSSSTQTGFGVSTSQPPSDSASLSSVLAEINSRLRNVVGNMQGDNTVPSGDYLFIVSLYVVFDILVLNSETLFCIHSGQMESNSRGLSSGSESGPVTGNERDTMEINGIGAAASASSVGSTSESEIQKLQTEAVQTSSNDERDVLVDKFVSSSSNQDLQSCSSGETIIGPEKEQDVTEPVKAAPLGLGVSGLERKRRTRLQPPGSKGSDDGSTSSSVNQNQQTRTGSQHILQSLASHGSAVNSRNANGPSQLPLPSSDRPIDVAGLMSQVLHSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIVQHVGSQDVGNMFAGMGGGQGGGGIDFSRMFQQMMPIVSQALGGANPPSIFPAEETELRAPHQDEFSEYGSLQHELEPLAERIEHLRRPTDVFRAVAENAVQLSGSGSASNDLLDELCSNESLAREYVDMLRRDASQLLEGHSEPEKL 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00424 955 MobiDBLite consensus disorder prediction 697 746 - -
Cca05g00424 955 MobiDBLite consensus disorder prediction 488 515 - -
Cca05g00424 955 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 6 953 - -
Cca05g00424 955 SMART ubq_7 24 95 IPR000626 GO:0005515
Cca05g00424 955 MobiDBLite consensus disorder prediction 94 131 - -
Cca05g00424 955 MobiDBLite consensus disorder prediction 94 124 - -
Cca05g00424 955 CDD Ubl_ubiquitin_like 26 93 - -
Cca05g00424 955 MobiDBLite consensus disorder prediction 646 752 - -
Cca05g00424 955 MobiDBLite consensus disorder prediction 445 515 - -
Cca05g00424 955 MobiDBLite consensus disorder prediction 177 217 - -
Cca05g00424 955 PRINTS Ubiquitin signature 34 54 IPR019956 -
Cca05g00424 955 PRINTS Ubiquitin signature 76 97 IPR019956 -
Cca05g00424 955 PRINTS Ubiquitin signature 55 75 IPR019956 -
Cca05g00424 955 MobiDBLite consensus disorder prediction 572 592 - -
Cca05g00424 955 Gene3D - 13 109 - -
Cca05g00424 955 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Cca05g00424 955 MobiDBLite consensus disorder prediction 572 594 - -
Cca05g00424 955 PANTHER OS07G0498800 PROTEIN 6 953 - -
Cca05g00424 955 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Cca05g00424 955 SUPERFAMILY Ubiquitin-like 19 98 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00424 Cca-Chr5 9242911 9271332 Transposed