Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00413 ATGGGGCACTGCTTCAGCAAACCCCGCAACAACCAAATACCAATCACCTTTGAATCACCACCACCTCGTAGAACCCAAAACCAACACCATGAGCATCAACCTCGTTACCCTTACCGTGTTCCAAACTCAGACCCTTCGCCTTCCACGGCGAGGCAATCATCATTGGGTCCTCAAATATTGGACAAACCATACTTCGACGTCAAAGCGCTTTACACGCTGGAGAAAGAACTCGGAAGGGGTCAATTTGGAATCACTAGTCTTTGCACGGAGAAGACCACGGGAAGGAAATACGCCTGCAAGTCCATTCCAAAGCGGAAGCTAACTCGAAAGAAGCAAATCGACGATGTTAAGAGGGAAATTCTGATCCTTCAACACCTCTCGGGGCAACCCAACATCGTTGAGTTCAAGGGTGCTTATGAGGACTGGCAGAACGTGCATTTGGTGATGGAGCTGTGTTTGGGGGGTGAGCTTTTCGATCGCATCACTACCAAGGGTAGTTACTCGGAGAGTGAAGCTGCTTCCATTTTCAGGCAAATCGTCAATGTCGTTCATGCTTGCCACTTCATGGGGGTCATGCATAGGGACCTCAAACCAGAAAATTTCTTGCTTGCTAGTAAAGTGTATAAAGAAATTGTTGGAAGTGCATACTACGTGGCCCCAGAGGTGTTAAAACGGAATTATGGAAAGGAGATAGATGTGTGGAGCGCAGGAATCATTTTATACATCCTTCTAAGTGGGGTGCCTCCATTTTGGGCTGAGAACGAGAAAGGCATATTTGATTCTATTTTGGGAGGCAAGCTTGACCTGGAGAGCGCACCATGGCCTTCTATTTCAGCTGCTGCAAAAGATTTGATCAGGAAAATGTTGAATTATGACCCTAAGAAGCGCATTACAGCTGCTGAAGCCCTTGAACACCCGTGGATGAAGGAAGGTGGTGAAGCATCTGACAAGCCTATAGACAATGCTGTTTTAACTAGGATGAAACAGTTTAGAGCTATGAACAAAATGAAGAAACTTGCTTTAAAGGTTATAGCAGAAAACCTTTCAGAGGAGGAAATCAAGGGCTTGAAACAAATGTTCAACAATATGGATACTGATCGCAGTGGCACAATCACATACGAGGAACTCAAATCTGGATTGACCAAATTGGGATCCAAGCTTAGTGAATATGAAATACAACAGCTAATGGATGCTGCTGATGTTGACAAGAGTGGAACTATTGATTATCAAGAGTTCATCACAGCCACTATAAACCGACACAAACTTGAGAAGGAAGAGCATTTGTATAAGGCTTTTCAATATTTTGATCAGGATAATAGCGGATATATAACAAGAGATGAGCTTAGACATGCTTTGACTGAATATCATATGGGAGATGAAGCAACTATAGATGAAGTCATCGATGATGTTGACACTGATAACGACGGGAGAATTAATTACCAGGAATTTGTTGCTATGATGAGAAAGGGTATCCTGGATATTGATGAGAAAGAGAAACAACGATAA 1506 0.4343 MGHCFSKPRNNQIPITFESPPPRRTQNQHHEHQPRYPYRVPNSDPSPSTARQSSLGPQILDKPYFDVKALYTLEKELGRGQFGITSLCTEKTTGRKYACKSIPKRKLTRKKQIDDVKREILILQHLSGQPNIVEFKGAYEDWQNVHLVMELCLGGELFDRITTKGSYSESEAASIFRQIVNVVHACHFMGVMHRDLKPENFLLASKVYKEIVGSAYYVAPEVLKRNYGKEIDVWSAGIILYILLSGVPPFWAENEKGIFDSILGGKLDLESAPWPSISAAAKDLIRKMLNYDPKKRITAAEALEHPWMKEGGEASDKPIDNAVLTRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDRSGTITYEELKSGLTKLGSKLSEYEIQQLMDAADVDKSGTIDYQEFITATINRHKLEKEEHLYKAFQYFDQDNSGYITRDELRHALTEYHMGDEATIDEVIDDVDTDNDGRINYQEFVAMMRKGILDIDEKEKQR 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00413 501 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 33 206 - -
Cca05g00413 501 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 205 494 - -
Cca05g00413 501 Pfam Protein kinase domain 71 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00413 501 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Cca05g00413 501 MobiDBLite consensus disorder prediction 42 56 - -
Cca05g00413 501 Gene3D Phosphorylase Kinase; domain 1 73 156 - -
Cca05g00413 501 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Cca05g00413 501 SUPERFAMILY Protein kinase-like (PK-like) 71 315 IPR011009 -
Cca05g00413 501 ProSitePatterns EF-hand calcium-binding domain. 400 412 IPR018247 -
Cca05g00413 501 Pfam EF-hand domain pair 356 416 IPR002048 GO:0005509
Cca05g00413 501 Pfam EF-hand domain pair 425 488 IPR002048 GO:0005509
Cca05g00413 501 ProSiteProfiles EF-hand calcium-binding domain profile. 387 422 IPR002048 GO:0005509
Cca05g00413 501 ProSiteProfiles EF-hand calcium-binding domain profile. 351 386 IPR002048 GO:0005509
Cca05g00413 501 SMART efh_1 427 455 IPR002048 GO:0005509
Cca05g00413 501 SMART efh_1 462 490 IPR002048 GO:0005509
Cca05g00413 501 SMART efh_1 391 419 IPR002048 GO:0005509
Cca05g00413 501 SMART efh_1 355 383 IPR002048 GO:0005509
Cca05g00413 501 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 206 - -
Cca05g00413 501 PANTHER SERINE/THREONINE-PROTEIN KINASE 205 494 - -
Cca05g00413 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Cca05g00413 501 ProSiteProfiles Protein kinase domain profile. 71 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00413 501 MobiDBLite consensus disorder prediction 1 56 - -
Cca05g00413 501 ProSiteProfiles EF-hand calcium-binding domain profile. 459 493 IPR002048 GO:0005509
Cca05g00413 501 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Cca05g00413 501 ProSitePatterns EF-hand calcium-binding domain. 364 376 IPR018247 -
Cca05g00413 501 SMART serkin_6 71 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00413 501 CDD STKc_CAMK 71 307 - -
Cca05g00413 501 MobiDBLite consensus disorder prediction 9 23 - -
Cca05g00413 501 Gene3D - 349 417 - -
Cca05g00413 501 Gene3D - 326 487 - -
Cca05g00413 501 Gene3D Transferase(Phosphotransferase) domain 1 157 325 - -
Cca05g00413 501 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Cca05g00413 501 SUPERFAMILY EF-hand 347 488 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00413 Cca-Chr5 8944929 8950519 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca05g00413 Pkinase 1.6e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00413 05 8944929 8950519 Cca05g00413 05 8944929 8950519 ECH