Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00403 ATGGAATTGGACACTGCAACATCTTCTGTTCAAACCTCTGCGGCGAAGCACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTGATTGACCAGAAACAATATGACATGGCCAAAGCTTGTTCCTCGGCTGGCATTCGGCTGAAGGGCATGAATAGAAGAACTGTTGATGTTATTGCATCCAGGCTGTACTTTTATTACTCATATAGCTATGAGCTTACAGGAGATCTTGCTGAAATTCAAGGCAACCTCCTTGCATTGCACCGAATTGCTACCCTGCGCCATGATGAGCTGGGTCAGGAAACGCTTCTTATTCTGTTACTTCGTAACTATCTACACTACAACCTATATTATCAGGCTGAGAAGTTGAGGTCTAAAGCTCCACGTTTTGAGGCACATTCAAATCAGCAGTTCTGTCGTTATCTCTTCTACCTTGGGAAAATTCGGACAATTCAGTTGGAGTATACCGATGCAAAAGAGTCTCTCCAGCAGGCTGCTCGTAAAGCTCCCAGTGCGGCACGGAGTTTTCGAATTTTATGTAACAAGTGGGCTGTGATAGTGCGTCTATTATTGGGAGAAATACCTGAGAGGACTGTCTTTATGCAGAGAGGAATGGATAAAGCTTTGAGGCCTTACTTTGAGCTTACTAATGCTGTCCGAATTGGTGACTTGGAGTTGTTTAGGAATGTGGCAGAGAAGTTTGATAAGACTTTCAGTAGAGACCAAACTCACAATTTGATTGTTCGGCTGCGTCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATATCATATTCACGCATCTCACTGGCTGATGTGGCTAAAAAGTTGAGGTTGAACTCTGCAAGTCCTGTTGCTGATGCTGAGAGCATTGTAGCAAAGGCTATCCGTGATGGGGCTATTGATGCTTCATTGGATCATGCCAATGGGTGGATGTTGGCATTTAATTCTCGGATTGCCTTTTGTCTTAACATGCACAATGAAGCTGTTCGAGCACTGCGTTTTCCACCAAACACACACAAGGAAAAGGAAAGTGCTGAAAAGAGGAGAGAGAGGCATCAACAAGAGCAAGAACTGGCTAAGCATATCGCAGAGGAGGATGATGACGACTTCTGA 1134 0.4418 MELDTATSSVQTSAAKHLLPELEIYCYLLVLLFLIDQKQYDMAKACSSAGIRLKGMNRRTVDVIASRLYFYYSYSYELTGDLAEIQGNLLALHRIATLRHDELGQETLLILLLRNYLHYNLYYQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLQQAARKAPSAARSFRILCNKWAVIVRLLLGEIPERTVFMQRGMDKALRPYFELTNAVRIGDLELFRNVAEKFDKTFSRDQTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADAESIVAKAIRDGAIDASLDHANGWMLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERHQQEQELAKHIAEEDDDDF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00403 377 MobiDBLite consensus disorder prediction 343 370 - -
Cca05g00403 377 SMART PINT_4 250 328 IPR000717 -
Cca05g00403 377 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 250 328 - -
Cca05g00403 377 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 377 - -
Cca05g00403 377 MobiDBLite consensus disorder prediction 343 377 - -
Cca05g00403 377 Coils Coil 344 371 - -
Cca05g00403 377 Pfam PCI domain 216 318 IPR000717 -
Cca05g00403 377 Gene3D - 147 323 - -
Cca05g00403 377 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 377 - -
Cca05g00403 377 Pfam Proteasome regulatory subunit C-terminal 319 376 IPR013586 GO:0000502|GO:0030234|GO:0042176
Cca05g00403 377 Coils Coil 153 173 - -
Cca05g00403 377 SUPERFAMILY "Winged helix" DNA-binding domain 250 321 IPR036390 -
Cca05g00403 377 ProSiteProfiles PCI domain profile. 144 325 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00403 Cca-Chr5 8798710 8804253 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00403 05 8798710 8804253 Cca05g00403 05 8798710 8804253 ECH
Cca05g00403 05 8798710 8804253 Cca07g00242 07 3076238 3079856 PCT