Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00402 ATGGCAAAATTTATGCTTCTTTTGGCTACAAGCCTCATCATAGGATCATGCTGTTTCACAATTAATACCTATGCCTTCTCACCTTCTGGATGGACCAATGCTCATGCCACTTTTTATGGGGGTAGTGATGCCTCAGGAACTATGGGGGGGGCTTGTGGATATGGGAATCTGTATTCAACTGGGTATGGGACTAGAACTGCGGCTTTAAGCACTGCCTTGTTTAATGATGGAGCTTCTTGCGGTCAGTGCTACAAGATCATATGTGATTACAAATCAGACTCAAGATGGTGCATCAAAGGAAGATCTATCACCATAACTGCCACGAACTTTTGCCCTCCCAATTTTGCTCTTCCCAACAACAATGGAGGCTGGTGCAACCCTCCACTCAAGCATTTTGATATGGCCCAACCCGCGTGGGAAAAGATTGGTATTTACAGAGGAGGGATCGTGCCTGTGTTATTCCAAAGGGTTCCGTGCAAGAAGCACGGAGGGGTTAGGTTCACTGTGAATGGGAGGGACTACTTTGAGCTTGTGTTGATCAGCAACGTGGCTGGGGCAGGATCCATCCAATCTGTATCCATTAAAGGCTCCAAAACTGTGTGGATGGCCATGTCAAGAAATTGGGGTGCCAATTGGCAATCCAATGCATATTTGAATGGTCAATCTTTGTCCTTCAGAGTCACAACCACCGATGGAGAAGTCAGAGTTTTTCCAAATATAGTTCCAGCAAGTTGGACATTTGGCCAAACTTTCTCTAGCCCAGTTCAGTTCTAA 774 0.4574 MAKFMLLLATSLIIGSCCFTINTYAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYKIICDYKSDSRWCIKGRSITITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTVNGRDYFELVLISNVAGAGSIQSVSIKGSKTVWMAMSRNWGANWQSNAYLNGQSLSFRVTTTDGEVRVFPNIVPASWTFGQTFSSPVQF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00402 257 PANTHER EXPANSIN-A15 14 257 IPR002963 GO:0009664
Cca05g00402 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Cca05g00402 257 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cca05g00402 257 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cca05g00402 257 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cca05g00402 257 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Cca05g00402 257 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Cca05g00402 257 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Cca05g00402 257 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Cca05g00402 257 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Cca05g00402 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cca05g00402 257 Gene3D - 16 160 IPR036908 -
Cca05g00402 257 SMART dpbb_1 66 154 IPR007112 -
Cca05g00402 257 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cca05g00402 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Cca05g00402 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Cca05g00402 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Cca05g00402 257 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cca05g00402 257 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cca05g00402 257 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Cca05g00402 257 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Cca05g00402 257 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cca05g00402 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Cca05g00402 257 Gene3D - 164 257 IPR036749 -
Cca05g00402 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 164 IPR007112 -
Cca05g00402 257 PANTHER EXPANSIN 14 257 - -
Cca05g00402 257 SUPERFAMILY Barwin-like endoglucanases 30 182 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00402 Cca-Chr5 8794777 8796944 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00402 05 8794777 8796944 Cca05g00402 05 8794777 8796944 ECH
Cca05g00402 05 8794777 8796944 Cca07g00243 07 3081208 3083220 PCT