Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00401 ATGGCAGCTATTGCTACAGTGATGCTCATAACTATGTCCCTAGCTTCTCTTATGAGTGCACTAAATGTAAATTATTACGAAAATACGTGCCCCCATTTAGAGTCCATCGTAGCTTCTGCTGTTCACAAAGCAACCATCAACGACAAAACTGTCCCAGCTGCTCTCCTTAGGATGCATTTTCATGATTGCTTCATAAGGGGTTGTGATGCCTCTGTTCTTCTGGAATCAAAGGGAAAGAACAAAGCAGAAAAGGATGGACCTCCTAACATTTCTTTGCATGCATTTTATGTCATTGACAAAGCTAAGAAAGCAGTGGAAGCCGTTTGCCCCGGAATCGTATCTTGTGCTGACATTTTGGCTCTTGCTGCTAGGGACGCTGTTACCTTGTCCGGTGGGCCCACTTGGGACGTACCAAAAGGAAGAAAGGATGGAAGAATATCAAAGGCCACAGAAACCAGACAATTGCCAGCTCCCACATTCAACATCTCCCAATTACAACAAAGCTTCTCACAAAGAGGGCTTTCTTTGGAAGATCTGGTAGCCCTCTCAGGAGGTCATACACTAGGATTCTCTCATTGTTCATCCTTCCAAAACAGAATCCACAAATTCAGCCCCAAACAAGACATTGACCCGTCCTTGAACCCTTCATTCGCAAGAAGCCTCCAAAGTATATGCCCCTCAAACAACAAGGTGAAAAATGCAGGTGCCCCATTGGATTCAAGTTCCACCTTGTTTGACAATGCTTATTACAAGCTACTCCTCCAAGGAAAAAGCATATTCTCTTCTGATCAAGCTTTGCTCACTCATCCAACCACTAAGGCTTTGGTTTCAAAGTTTGCTCATTCCCAAGAGGAATTTGAAAGGGCCTTTGTCAAGTCCATGATCAAGATGAGCAGCATCACCAATAACGGTGGACAAGAAATTAGGCTCAATTGTAAATTCGTTAGATGA 951 0.4364 MAAIATVMLITMSLASLMSALNVNYYENTCPHLESIVASAVHKATINDKTVPAALLRMHFHDCFIRGCDASVLLESKGKNKAEKDGPPNISLHAFYVIDKAKKAVEAVCPGIVSCADILALAARDAVTLSGGPTWDVPKGRKDGRISKATETRQLPAPTFNISQLQQSFSQRGLSLEDLVALSGGHTLGFSHCSSFQNRIHKFSPKQDIDPSLNPSFARSLQSICPSNNKVKNAGAPLDSSSTLFDNAYYKLLLQGKSIFSSDQALLTHPTTKALVSKFAHSQEEFERAFVKSMIKMSSITNNGGQEIRLNCKFVR 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00401 316 SUPERFAMILY Heme-dependent peroxidases 21 315 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PANTHER PEROXIDASE 25-RELATED 6 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 ProSitePatterns Peroxidases proximal heme-ligand signature. 178 188 IPR019793 -
Cca05g00401 316 Gene3D - 24 315 - -
Cca05g00401 316 PANTHER PEROXIDASE 64 6 315 - -
Cca05g00401 316 Gene3D Peroxidase, domain 2 156 297 - -
Cca05g00401 316 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PRINTS Plant peroxidase signature 131 146 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PRINTS Plant peroxidase signature 177 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 ProSiteProfiles Plant heme peroxidase family profile. 20 316 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 Pfam Peroxidase 38 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 CDD secretory_peroxidase 21 315 IPR033905 GO:0004601|GO:0042744
Cca05g00401 316 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PRINTS Haem peroxidase superfamily signature 131 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g00401 316 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00401 Cca-Chr5 8783567 8785764 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00401 05 8783567 8785764 Cca05g00401 05 8783567 8785764 ECH