Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00400 ATGACATGTATTAGGTGGCTTTCCTCTCTACGAAGAACATCAGGTACATCACGTAAAGCATGCGAGGAAGATGGATTACGTAACAAGCGAAGCGTGAACGAGGAATATCTCGAAGCGTTCAGAACAAAGTCCTACATTGAAATATGCAACAAAGCACAAGTGAGGATTGGAAAAACAAGCACCAAAACACTCtcttcatcatcatcttcttcttcttctccttcttcCATTCCTTTGTGCATGCAACTCACGGAGTATTTGCTAGAGCCACGCCAAGAAACGATAACAAACATAACGAAGAGGCTGAAGCTGCATCATCTTCTCGTGGAATATTTCGAAGCCAGCTTAGAAGCGTGTCGTTGTTGTGACACAATCCTTGAAGCCATCCATTCAATGCGTTTTGCTTATCGAAGAATCACACGCGTTGTTAAGCTAAGCAAAATGGTTTTGGACGATGCAAACGACCAATCCAACAACAATAATAACAAGGATGCTATGTATAGAGAACTCGCTTCTTTTGCTTTGCAAAACAACCCTTTGTCGAGTGTTAACACAGTTCAGTTTCGTGTCATTCACGATAAGTACGTGGAACTTTTGCATAGGTTAAGGTCAATGAGGAGGGAAATTCGAAGGAGATTAACGATGAAGAGGGTTTTCAAGAACGTTGCGGGGGTTGCTCTTGTTACTTCACATAGCGTGGTTCTTGTGGCTTTGTTGGTGTTTGCTTTTCATAGCATGGTTGGGTTGGTGGCAGCGCCTAGTATTTTATGTAGCTTGGTTGGTTTGTTTTTGAAGAAGGATCGTGAAAATATAGGGTTGAGAGCTTGTGAGAGGCTGTGTGAGCAACTTGATGTGGCTGCGAAAGGGGTTTATATTCTGATCAATGATTTGGACACTATGAGTAGGATGGTGAAGAGGTTGCACGATGAGGTGGAGCATAGGAGAGTGGTTGCTCAAGTTTGTGTGAGGAATGGGAAGTGTGAGATTCTAAAGCAGGTTATGAGGGAATTTTGTGACCAAGAGTCTAGTTTTTTGGAGCTGTTGGACGAGCTTGAGGGACATGTTTACTTGTGCTTTCTCACCACAAATAGGTCTAGGAGACTTGTTATGCAGGAAATTACAGAGAAAAAAGATTGA 1137 0.4134 MTCIRWLSSLRRTSGTSRKACEEDGLRNKRSVNEEYLEAFRTKSYIEICNKAQVRIGKTSTKTLSSSSSSSSSPSSIPLCMQLTEYLLEPRQETITNITKRLKLHHLLVEYFEASLEACRCCDTILEAIHSMRFAYRRITRVVKLSKMVLDDANDQSNNNNNKDAMYRELASFALQNNPLSSVNTVQFRVIHDKYVELLHRLRSMRREIRRRLTMKRVFKNVAGVALVTSHSVVLVALLVFAFHSMVGLVAAPSILCSLVGLFLKKDRENIGLRACERLCEQLDVAAKGVYILINDLDTMSRMVKRLHDEVEHRRVVAQVCVRNGKCEILKQVMREFCDQESSFLELLDELEGHVYLCFLTTNRSRRLVMQEITEKKD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00400 378 Pfam Protein of unknown function (DUF677) 68 373 IPR007749 -
Cca05g00400 378 PANTHER UPF0496 PROTEIN 2-RELATED 14 377 - -
Cca05g00400 378 PANTHER UPF0496 PROTEIN 3-RELATED 14 377 IPR007749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00400 Cca-Chr5 8773581 8775307 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00400 05 8773581 8775307 Cca05g00400 05 8773581 8775307 ECH