Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00399 ATGACATGTATTAGGTGGCTTTCCTCTCTACGAAGAACATCAGGTACATCACGTAAAGCATGCGAGGAAGATGGATTACGTAACAAGCGAAGCGTGAACGAGGAATATCTCGAAGCGTTCAGAACAAAGTCCTACATTGAAATATGCAACAAAGCACAAGTGAGGATTGGAAAAACAAGCACCAAAACACTCtcttcatcatcatcttcttcttcttctccttcttcCATTCCTTTGTGCATGCAACTCACGGAGTATTTGCTAGAGCCACGCCAAGAAACGATAACAAACATAACGAAGAGGCTGAAGCTGCATCATCTTCTCGTGGAATATTTCGAAGCCAGCTTAGAAGCGTGTCGTTGTTGTGACACAATCCTTGAAGCCATCCATTCAATGCGTTTTGCTTATCGAAGAATCACACGCGTTGTTAAGCTAAGCAAAATGGTTTTGGACGATGCAAACGACCAATCCAACAACAATAATAACAAGGATGCTATGTTCACCGGTGTCTCCTCCACCTCCAAACAAATCCATCCCCACTCTATCCTCTATCTATCACTGTGTCCCAATTCAGCATTTGTAACCGTATCTGGTTGGGCCGCACACGATTCTTCCGGCAAAATCACCCCCTACACCTTCAAAAGAAGGGAGAACGGCGTTAACGACGTGACCATAAAGATCTTGTACTGTGGGATTTGCCACACTGACCTCCACCATGTTAAAAATGAATGGGGAATCACTATGTATCCCGTCGTACCCGGACACGAAATAATTGGGGTGATTACTAAGGTGGGGAGCGATGTGAAGGGGTTCAAGGAAGGAGACAGGGTGGGTGTGGGGTGTTTGGCAGCTTCGTGTTTGGATTGTGAGTACTGCGACGCACATCAAGAAAACTACTGTGAAAAGTTGCAATTTGTGTACAACGGAATCTTCTGGGATGGAAGCATCACCTATGGTGGTTACTCACAAATCTTCGTCGCAGATCACAGATATGTGGTGCACATTCCTGCGAACCTAGCAATGGACGCAGCAGCTCCTCTACTATGCGCAGGAATAACAGTGTTCAGTCCCTTGAAGGACCACGGTTTGGTAGAAACTCCGGGGAAAAAGATTGGTGTGGTTGGTTTGGGTGGGCTTGGACACATAGCTGTTAAATTTGGCAAGGCTTTTGGCCACCATGTTACTGTCATAAGCACTTCTCCCTCCAAAGAAGCTGAAGCTAAGGACCGTTTGGGTGCTGATGATTTCATAGTCAGCTCCAACCCCAAACAATTACAGGCTGCAAAAAGAAGCCTAGATTTCATATTGGACACTGTATCAGCAGAGCACGCTCTCTTGCCCATCATGGAAATGCTAAAAGTAAATGGGACCTTATTCATTGTGGGTGCACCGGACAAGCCATTCCAATTACCAGCTTTCCCATTGATATTTGGTAGGAAGAGATCAGTGAAGGGTGGGATCATAGGGGGAATGAAAGAGACGCAGGAAATGATGGAGGTTTGCGGGAAATACAATATAACGAGTGACATTGAGTTGATCACACCTGACAGAATCAACGAGGCTTTGGAGCGTCTTGCTAAAAACGATGTACGCTACCGTTTTGTCATTGACATTGCAGCCACTTCCAACAACTAG 1635 0.4471 MTCIRWLSSLRRTSGTSRKACEEDGLRNKRSVNEEYLEAFRTKSYIEICNKAQVRIGKTSTKTLSSSSSSSSSPSSIPLCMQLTEYLLEPRQETITNITKRLKLHHLLVEYFEASLEACRCCDTILEAIHSMRFAYRRITRVVKLSKMVLDDANDQSNNNNNKDAMFTGVSSTSKQIHPHSILYLSLCPNSAFVTVSGWAAHDSSGKITPYTFKRRENGVNDVTIKILYCGICHTDLHHVKNEWGITMYPVVPGHEIIGVITKVGSDVKGFKEGDRVGVGCLAASCLDCEYCDAHQENYCEKLQFVYNGIFWDGSITYGGYSQIFVADHRYVVHIPANLAMDAAAPLLCAGITVFSPLKDHGLVETPGKKIGVVGLGGLGHIAVKFGKAFGHHVTVISTSPSKEAEAKDRLGADDFIVSSNPKQLQAAKRSLDFILDTVSAEHALLPIMEMLKVNGTLFIVGAPDKPFQLPAFPLIFGRKRSVKGGIIGGMKETQEMMEVCGKYNITSDIELITPDRINEALERLAKNDVRYRFVIDIAATSNN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00399 544 PANTHER ALDEHYDE REDUCTASE 194 541 - -
Cca05g00399 544 Pfam Alcohol dehydrogenase GroES-like domain 221 334 IPR013154 -
Cca05g00399 544 CDD CAD1 198 537 - -
Cca05g00399 544 Gene3D - 199 538 - -
Cca05g00399 544 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 341 506 IPR036291 -
Cca05g00399 544 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 254 268 IPR002328 GO:0008270|GO:0016491
Cca05g00399 544 Gene3D - 350 508 - -
Cca05g00399 544 SUPERFAMILY GroES-like 201 365 IPR011032 -
Cca05g00399 544 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED 194 541 - -
Cca05g00399 544 Coils Coil 538 544 - -
Cca05g00399 544 Pfam Zinc-binding dehydrogenase 378 500 IPR013149 -
Cca05g00399 544 SMART PKS_ER_names_mod 203 536 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00399 Cca-Chr5 8742914 8761587 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00399 05 8742914 8761587 Cca05g00399 05 8742914 8761587 ECH