Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00397 ATGGTCACCACTGCTAAATCTTCAAACCATCACTCGCGGCCTAGTGCCCCGCCACCGGCGCAGCCTATAGATGGCAGCAGCCCGAAGTTCTGGCGAAAAAATCTTTCCTCGCCTTGGGCTCAGGTGGTTTGCGGCGGCGAGCCAGAATCAGTAGCTGACATTAACCAATCGCCACCTTCGCCATCATCGTCGTCGTCTCTGGTGGCTGACCAATTGCCGTTGTCAGAGTGTTCTCCTAAGGTGCTTTTATCGTCTTCGCCTGTGCATAATTGTAATACTGTTGGTGCTGCAGATTGCTCTGAGAGTTGTGAGGGCAATGTGGATCGCTTTAAGAAGCCCATTTGGAAGAAGCCCTCGAACGGAGTTGAGTGTGGACCTGTAATGGGCGCTGAATCGTGGCCCGCTTTGTCTGTATCCACCAAAGGTTCTGCCAAATTGTCAGCTGAATCTTCCTCCAAGACGGTCGTTGATGGATCACTCTCAACTTCTCAGGGGCCAATGACTTCACAATCTTCTTCTCGGAAACAGGTTACTACTGATGCAAGACATAACTCTGTAACCAATTATAATGGTCTTAATAGACCGAGACCGAGACCGATGAGGCGAGTAAGTGGCAACAGCAGTGGGTCTGTTGGCCCTTCACAGAGCAACTTCTCCAACCCTCCCCTGCCACCACCACCCCCGCCTTTTCCTGTATACCAGCTCCCACCAGTTAGCTATGGTAATATGGTATCTGGAACCCGTGATCCTGTTACAAGAGATCAATACTGGGACAATAACTGGGATGCAAGACCAATTGTTGGGGGTTTTATGCCTATAATGAACGAATATCAGGGTTCCTCTCGTAGGGGTTACTTTGGGCCGCCTCATCCACGTGGAGATGGTTCCTATCATAATAGCAGGCGTGATGATCGTGGAAATTATGTGAGTACTAGAGATGCTTTTTTACCTCAATCAAGGATGCCTCCAAGAGGATTACTGAGGCACCCACCACCTAGTACTGCTGCAACTCAGCCCATTGGATCATATGCTAACCCCATGGGTTTTTCTGagttctattattatCGACCTGTAGCAGTGGAACAGTTTACAGGTGTGCCATACTTCACTCATGGCCCCCCTCCTGCAACATATTTCTCTGCTGCAGAACCTCTCTCCAATTTGATACTCAAGCAGATTGAATATTACTTTTGTGATGATAATTTAGTGAGAGATGAGTTTTTAAAGTCCAAAATGGATGATCAGGGCTGGGTTCCTGTTACTTTGATAGCGGACTTCCCTCGAGTTAGAAATTTGACAAGTAACATTCAGTTGATACTGGATTCTCTGAGAACTTCTTTGGTCGTGGAAGTGCAGGGTGACAAGTTGAGACGAAAAAATGAGTGGTCGGCATGGGTGTTAGCTGCTGATTCTGGTGGTTCAGTATCTCCTCTTGCATGGAGACACAGTAATCTGACATCTAATTTTCAAAATATCACATTGGAAGAAACGACTAAAGATGAAAGTTCAACAGAATCTAGCACTCAGTCTCAACTCCCAAATGGTAGTGATGGTACAGGAAGCCGTTAA 1569 0.4691 MVTTAKSSNHHSRPSAPPPAQPIDGSSPKFWRKNLSSPWAQVVCGGEPESVADINQSPPSPSSSSSLVADQLPLSECSPKVLLSSSPVHNCNTVGAADCSESCEGNVDRFKKPIWKKPSNGVECGPVMGAESWPALSVSTKGSAKLSAESSSKTVVDGSLSTSQGPMTSQSSSRKQVTTDARHNSVTNYNGLNRPRPRPMRRVSGNSSGSVGPSQSNFSNPPLPPPPPPFPVYQLPPVSYGNMVSGTRDPVTRDQYWDNNWDARPIVGGFMPIMNEYQGSSRRGYFGPPHPRGDGSYHNSRRDDRGNYVSTRDAFLPQSRMPPRGLLRHPPPSTAATQPIGSYANPMGFSEFYYYRPVAVEQFTGVPYFTHGPPPATYFSAAEPLSNLILKQIEYYFCDDNLVRDEFLKSKMDDQGWVPVTLIADFPRVRNLTSNIQLILDSLRTSLVVEVQGDKLRRKNEWSAWVLAADSGGSVSPLAWRHSNLTSNFQNITLEETTKDESSTESSTQSQLPNGSDGTGSR 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00397 522 MobiDBLite consensus disorder prediction 281 307 - -
Cca05g00397 522 SMART la 383 461 IPR006630 -
Cca05g00397 522 MobiDBLite consensus disorder prediction 495 522 - -
Cca05g00397 522 MobiDBLite consensus disorder prediction 46 69 - -
Cca05g00397 522 MobiDBLite consensus disorder prediction 218 234 - -
Cca05g00397 522 MobiDBLite consensus disorder prediction 203 217 - -
Cca05g00397 522 MobiDBLite consensus disorder prediction 145 192 - -
Cca05g00397 522 Gene3D - 379 467 IPR036388 -
Cca05g00397 522 MobiDBLite consensus disorder prediction 145 234 - -
Cca05g00397 522 PANTHER LA-RELATED PROTEIN 1B 7 516 - -
Cca05g00397 522 CDD LAM 389 459 - -
Cca05g00397 522 ProSiteProfiles La-type HTH domain profile. 379 468 IPR006630 -
Cca05g00397 522 MobiDBLite consensus disorder prediction 1 32 - -
Cca05g00397 522 MobiDBLite consensus disorder prediction 53 69 - -
Cca05g00397 522 Pfam La domain 389 444 IPR006630 -
Cca05g00397 522 PANTHER LUPUS LA PROTEIN-RELATED 7 516 IPR045180 -
Cca05g00397 522 SUPERFAMILY "Winged helix" DNA-binding domain 377 468 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00397 Cca-Chr5 8717792 8721994 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00397 05 8717792 8721994 Cca05g00397 05 8717792 8721994 ECH
Cca05g00397 05 8717792 8721994 Cca07g00246 07 3106472 3110762 PCT