Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00393 ATGGATAAGTTATTTTGGGAGAGATCACTAGTGACGGTTGTGTTGGTTTTGTTTGCCACGATCCGATTTCCGAAAGTTGTAGCTGTTAACGGAAAAATTCCGGCATTGTTTGCATTTGGAGACTCAATCCTCGATACCGGAAATAATAACAATATTCTATCATCAACTAAGTGCAATTATCCTCCCTATGGAAGGGATTTTCCCGGAGCAGTACCTACAGGAAGATGCTGTAATGGAAAAACTCCCACAGATTTGATAGCAATGGCTCTGGGAATCAAAGATTCGGTACCAGCATATCTTAGCGGTAACTTGAGTCCTCAAGACCTCGCCACCGGTGTATGCTTCGCTTCAGCTGGGTCAGGAATCGACGATCAAACTGCTCGCTTACTGGCAACTATATCACAACCAGCCCAACTGCAAATGTTCCGAGAATACATAGGAAAGCTGACAGCAGCTGTTGGACAACAACAAGCGACCCAAATCATATCCGACGGCGTATTCCTCGTTTCCGCAGGCAACAATGACATTGCCATTACCTTTACCTCATTAGCCCTAGCAGTGCCTTTTCCTATATATTCCGCTGGTTTAGTTTCCACCGCTTCAAATTTCTTCAAGAGTATATATGCACTTGGAGCACGGAAAGTTTGGGTACTAAGCACATTGCCACTAGGATGCTTGCCTGGAGGTAGATTAGTAGCGGGAGGACCATTAAGGGCTTGTGCAGTATTTGAGAATATGTTAGCGCAGTCATTCAATGGTCAATTATCAACAGCGGTTAATTCAATCAGAGCCAGCTATTCCGATTATGACATTAGGTTCATCGATGTCTATACTCCCCTCTATAATATCATACAAAATCCTCAGGCATCAGGGTTTGAGGACGTGGCGGACGCGTGTTGCGGGACTGGGCCATTCAAGACGGCAGGGTTATGTAACCTTTTGGTTGTGTGTCCAAATCCTTCAACCTACGTTTTCTGGGATTTTGCCCATCCAACTGAGAGAGCTTATCGGCTTGTTGTCGATTCTATACTACAGTCAAACTCAATGAATATTAATGCCTCTACTCTCTCAAACTAA 1077 0.4429 MDKLFWERSLVTVVLVLFATIRFPKVVAVNGKIPALFAFGDSILDTGNNNNILSSTKCNYPPYGRDFPGAVPTGRCCNGKTPTDLIAMALGIKDSVPAYLSGNLSPQDLATGVCFASAGSGIDDQTARLLATISQPAQLQMFREYIGKLTAAVGQQQATQIISDGVFLVSAGNNDIAITFTSLALAVPFPIYSAGLVSTASNFFKSIYALGARKVWVLSTLPLGCLPGGRLVAGGPLRACAVFENMLAQSFNGQLSTAVNSIRASYSDYDIRFIDVYTPLYNIIQNPQASGFEDVADACCGTGPFKTAGLCNLLVVCPNPSTYVFWDFAHPTERAYRLVVDSILQSNSMNINASTLSN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00393 358 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 36 47 IPR008265 GO:0006629|GO:0016298
Cca05g00393 358 Pfam GDSL-like Lipase/Acylhydrolase 36 341 IPR001087 GO:0016788
Cca05g00393 358 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 2 351 - -
Cca05g00393 358 Gene3D SGNH hydrolase 23 350 IPR036514 -
Cca05g00393 358 PANTHER GDSL ESTERASE/LIPASE EXL3 2 351 - -
Cca05g00393 358 SUPERFAMILY SGNH hydrolase 37 345 - -
Cca05g00393 358 CDD SGNH_plant_lipase_like 34 347 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00393 Cca-Chr5 8662549 8667562 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00393 05 8662549 8667562 Cca07g00253 07 3186740 3193674 PCT