Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00390 ATGGCTTTTATGCACCTCACTGCCTCTTCTGCTCCTTTATTGCTCAGTTTGACACTAATATTCGGTTTATGGCACAGAACGGAGGGTGTGGTGAAGCTGCCACCAAACGTTTCAGTTCCAGCACTGTTTGCGTTTGGAGATTCGATCGCGGACACAGGCAACAACAACGACTTGAAAACATTGGTCAAGTGCAACTTCCCACCTTATGGCAAAGATTTTCAGGGAGGAAACCCAACGGGTCGATTTTGCAATGGAAAAGTTCCTTCAGACATACTAGCTGAAGAATTGGGTGTTAAGGAGTATTTGCCAGCTTATTTGGATCCAAATCTCAAATCTAGTGATCTTCTTACCGGCGTATGCTTTGCTTCCGGTGCTTCAGGATACGATCCTTTGACACCACAAATTGCGTCAGTGATACCATTATCAGCTCAAATAGACATGTTCAAAGAGTACATAGCGAAGGTGAAAGGCATGGTTGGAGAGAAAAGAACAAACTTCATTCTAGCCAACAGTCTTTACCTTGTGGTGGGAGGCAGTGACGACATTGCTAACACCTATTTTGTTGCTCATGCCAGAATATTGCAGTATGATATTCCTTCTTACACTGATCTAATGGTGAACTCCGCTACTGATTTTGTGAAGGAACTATATAATCTGGGAGCTCGTAGACTGGCAGTACTCAGTGCACCACCGATTGGATGCGTGCCATCACAGAGAACCCTAGCCGGAGGGCTAACAAGAAAGTGTTCCGAAAAGTACAATAACGCAGCAAAGTTGTTCAATTCCAAACTGTTGAAGCATTTGGATTCCCTTGCTCATAACTCACCCAATAGCAGGATTGTTTACATTGATGTTTACAACCCTCTACTTGATATCATTGAAAACTACCAAAATTATGGATATAAAGTTATGGATAAGGGTTGCTGTGGCACAGGAGATCTGGAGGTTGCAGTGTTATGCAACCCTTTGGATGCCACTTGTTCTAATGCTTCGGAATATGTCTTTTGGGATAGTTATCATCCTACAGAAGGAGTATACAGAAAGCTCGTAAAGCATGTTCTTGATAAATACATCAATCGATTGATTTGA 1089 0.4252 MAFMHLTASSAPLLLSLTLIFGLWHRTEGVVKLPPNVSVPALFAFGDSIADTGNNNDLKTLVKCNFPPYGKDFQGGNPTGRFCNGKVPSDILAEELGVKEYLPAYLDPNLKSSDLLTGVCFASGASGYDPLTPQIASVIPLSAQIDMFKEYIAKVKGMVGEKRTNFILANSLYLVVGGSDDIANTYFVAHARILQYDIPSYTDLMVNSATDFVKELYNLGARRLAVLSAPPIGCVPSQRTLAGGLTRKCSEKYNNAAKLFNSKLLKHLDSLAHNSPNSRIVYIDVYNPLLDIIENYQNYGYKVMDKGCCGTGDLEVAVLCNPLDATCSNASEYVFWDSYHPTEGVYRKLVKHVLDKYINRLI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00390 362 Pfam GDSL-like Lipase/Acylhydrolase 42 352 IPR001087 GO:0016788
Cca05g00390 362 PANTHER GDSL ESTERASE/LIPASE EXL3 9 361 - -
Cca05g00390 362 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 9 361 - -
Cca05g00390 362 CDD SGNH_plant_lipase_like 40 357 IPR035669 -
Cca05g00390 362 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 42 53 IPR008265 GO:0006629|GO:0016298
Cca05g00390 362 Gene3D SGNH hydrolase 33 358 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00390 Cca-Chr5 8525935 8530837 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00390 05 8525935 8530837 Cca05g00390 05 8525935 8530837 ECH
Cca05g00390 05 8525935 8530837 Cca07g00254 07 3203620 3221005 PCT