Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00360 ATGGCTCTCTTAACTTCCCTCCCTGAGCAAGCCACCCCCAAACACCACAAACGTAAGcagcagcagcaacaacaacaacaaaagcaaaaacaaaaacaaaagcaaaaacagaaacagaaacCACCCTCTTCATGGGACCAAATCAAGAACCTCATCACCTGCAAACAGATCGAAGGGTCGAGCGTGCATGACCCTTCCAAAGGGTACTCAAAGCTAGGATCTTCTTGCAGCTCCATATGCAGCTTCAGAGATGTTGTCCATGGAAACACACGTGTCGTGCACACCTCTGATAACTCCTCACCAGAGAGTAGCTCACTGGGTCAAGAAACTGGCTTACTCACTAGAAAACCTGTCACTACTACTCGCTCTACATCAGTATCGAGAAAATCCAACGGCGGAGCAACCTATACTCCATCATCTTCCAGAGGAATGCAATTCAGGAAGCTATCTGGGTGTTATGAATGTCACATGATCATTGACCCTAGCAGGTTGCCGATTGCGAGGAGCTCTGTGTGTGCTTGCTCTCACTGTGGTGAGGTATTCCCTAAAATGGAAAGTTTGGAGCTGCATCAAGCTGTTCGTCATGCTGTTTCGGAGCTGGGAGCGGAGGATTCGGGTCGGAACATAGTGGAAATAATATTCAAATCGAGCTGGTTGAAGAAGGACAACCCGATATGCAAGATCGAACGGATCCTAAAAGTGCACAACACCCAACGCACCATCCAACGGTTCGAGGAGTGCAGGGACACGGTAAAGAGCCGTGCGCTGAGCAGCAGCAAGAAAAACCCGCGTTGCGCAGCCGACGGCAACGAACTCCTGCGGTTCCACTGCACCACCTTAACGTGCGCACTGGGCGCACGTGGGTCGTCCTCGCTGTGCGCCGCCGTGCCCGCCTGCGGAGTGTGCACCATCATCCGCCACGGCTTCCAAGGCGCCGACCACGCCAAGCTGAAGGGCGTGAGGACCACCGCCAGCAGCGGCAGGGCCCACGACGCCGTGCTGTGCGGCGGCGACGCCACGCGGAGGGCCATGCTCGTGTGCCGCGTGATCGCAGGTAGGGTGAAGCGCGTGGCGGAGGACGCGCCTTCGGATGAGGAACACGTGTCGGTTGCGTCGTATGATTCCGTAGCTGGATACGCTGGAATCTACTCGAATCTCGAGGAGTTGGTTGTTTTCAACCCGAAGGCTATCCTTCCTTGTTTCGTGGTCATTTATAAGGTTCTTTCGTGTTAG 1233 0.5199 MALLTSLPEQATPKHHKRKQQQQQQQQKQKQKQKQKQKQKPPSSWDQIKNLITCKQIEGSSVHDPSKGYSKLGSSCSSICSFRDVVHGNTRVVHTSDNSSPESSSLGQETGLLTRKPVTTTRSTSVSRKSNGGATYTPSSSRGMQFRKLSGCYECHMIIDPSRLPIARSSVCACSHCGEVFPKMESLELHQAVRHAVSELGAEDSGRNIVEIIFKSSWLKKDNPICKIERILKVHNTQRTIQRFEECRDTVKSRALSSSKKNPRCAADGNELLRFHCTTLTCALGARGSSSLCAAVPACGVCTIIRHGFQGADHAKLKGVRTTASSGRAHDAVLCGGDATRRAMLVCRVIAGRVKRVAEDAPSDEEHVSVASYDSVAGYAGIYSNLEELVVFNPKAILPCFVVIYKVLSC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00360 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 200 IPR013087 -
Cca05g00360 410 MobiDBLite consensus disorder prediction 92 141 - -
Cca05g00360 410 ProSitePatterns Zinc finger C2H2 type domain signature. 172 195 IPR013087 -
Cca05g00360 410 MobiDBLite consensus disorder prediction 1 47 - -
Cca05g00360 410 Gene3D - 196 407 - -
Cca05g00360 410 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 28 409 - -
Cca05g00360 410 SUPERFAMILY ADP-ribosylation 197 406 - -
Cca05g00360 410 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 28 409 - -
Cca05g00360 410 Coils Coil 16 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00360 Cca-Chr5 7910974 7914506 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca05g00360 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00360 05 7910974 7914506 Cca05g00360 05 7910974 7914506 ECH