Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00358 ATGTTGTCCCTACATGTGGTGCTTGAGCCATTAAATTTTGTTTTGGATATTGAAGTCAATTACACTAACAAGATTGAGTTTCCTCCAGATGTTTATAACAATAGGACGATCCTGAAGCATATGGAGAAGGGACTCCTCGAGAGCTTCACACCTATAACAAGAGCAAACAATAGCTACATGTCGCTTAAGGCGAAAAAGGGATTCAGAATGATAGGATCCTTTCTTACCTGGGCGCTTGTGATGGTCTTTGGCTATGCTTATCCAGCTTATGAATGTTATAAAGCAGTTGAAAAGAATAAGCCAGAAATTGAACAGCTTCGCTTTTGGTGCCAGTATTGGATTTTGGTGGCTGTTTTGACAGTATGTGAGAGGGTTGGTGATACTTTTATATCATGGGTCCCAATGTACAGTGAAGCTAAGTTAGCATTTTTCATATTCCTGTGGTACCCTAAAACTAAGGGAACAACATATGTGTATGACTCCTTCTTTAGACCCTATGTTGCAAAACATGAGCCTGAAATTGATCGCAATTTGTTGGAACTGAGGACAAGGGCAGGGGATATTGCAGTTTTGTATTGGCAAAGAGCTTTCAGTTATGGTCAGACTAGAATATATGACATTTTGCAATTTGTTGCAGCACAATCAACTCCATCACCTCGCCCTGCTCAGCCACGACCAGGTGTGAAGGTTCGCCAACAAGCACCTACAAATCGCCAACCAGCTGCTGCAGCAGAACCACAAGTTGAGGAACCTCCATCTCCCACCTCTAGCACATCTTCAAGTCAGATCCAAAGGGAGGTAGAAGAAGAATTAGGTTTAACTACTCAGAAGTCTGCTGGAGCAGTTTTGAGTACTCAGAAGTCTAATCCTGCACCCGAAACAACCAACCAATCTGCAGCAGCAGAGGCAGAGCCAAAACAGATTGAAGCAGCACCATCTTCTTCATCCTCTTCAGCAAAAGAAAATGGGAACCCGCCTACTCCCACCAAAGAGACCATGATGGAAGAAAGCATTCGGCCTGATGCCACGTTATATGGACTCAGATTTCAACTAGATGTTTGCATCGGCTTCTTTGTATAG 1080 0.4315 MLSLHVVLEPLNFVLDIEVNYTNKIEFPPDVYNNRTILKHMEKGLLESFTPITRANNSYMSLKAKKGFRMIGSFLTWALVMVFGYAYPAYECYKAVEKNKPEIEQLRFWCQYWILVAVLTVCERVGDTFISWVPMYSEAKLAFFIFLWYPKTKGTTYVYDSFFRPYVAKHEPEIDRNLLELRTRAGDIAVLYWQRAFSYGQTRIYDILQFVAAQSTPSPRPAQPRPGVKVRQQAPTNRQPAAAAEPQVEEPPSPTSSTSSSQIQREVEEELGLTTQKSAGAVLSTQKSNPAPETTNQSAAAEAEPKQIEAAPSSSSSSAKENGNPPTPTKETMMEESIRPDATLYGLRFQLDVCIGFFV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00358 359 MobiDBLite consensus disorder prediction 309 331 - -
Cca05g00358 359 MobiDBLite consensus disorder prediction 215 269 - -
Cca05g00358 359 Pfam TB2/DP1, HVA22 family 88 166 IPR004345 -
Cca05g00358 359 MobiDBLite consensus disorder prediction 281 302 - -
Cca05g00358 359 MobiDBLite consensus disorder prediction 250 269 - -
Cca05g00358 359 MobiDBLite consensus disorder prediction 281 336 - -
Cca05g00358 359 PANTHER HVA22-LIKE PROTEIN 75 339 - -
Cca05g00358 359 PANTHER HVA22-LIKE PROTEINS 75 339 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00358 Cca-Chr5 7871109 7877063 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00358 05 7871109 7877063 Cca05g00358 05 7871109 7877063 ECH
Cca05g00358 05 7871109 7877063 Cca07g00275 07 3532376 3535205 PCT