Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00352 ATGGGAGTTCCAGCGTTCTACCGGTGGCTGGCGGAGAAGTATCCGATGGTCGTTGTGGACGCAATCGAAGAGGAACCGGTCGTCATCGAAGGTGTTCAAATCCCCGTCGATACGAGCAAGAAAAACCCTAACGACATCGAATACGATAACCTCTACCTCGACATGAACGGAATCATTCACCCGTGCTTCCATCCCGAGGATAGGCCGTCTCCGACGTCGTTCGACGAGGTGTTTGAGTGCATGTTTGACTACATCGATAGGCTATTCGTCATGGTGCGGCCGCGGAAGCTGCTCTATATGGCTATTGACGGTGTTGCGCCGAGGGCGAAAATGAACCAGCAACGGTCTAGGCGGTTTAGGGCTGCGAAAGATGCAGCTGATGCGGCTGCCGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAAGGAGGGCAGAAAGCTTCCTCCTAAAGAAGAGTCGCAAACTTTTGATTCAAATGTCATTACACCTGGAACTGAATTTATGGCTGTTTTGTCAATTGCACTTCAGTACTATGTACATCTTAGGTTGAACAATGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTGCAGAGAAATCTTAAAGGTTATGATCCAAACACACGTCATTGCCTATATGGTTTGGATGCTGATTTGATTATGTTGGCATTGGCTACCCATGAAATCCATTTTTCAATTCTTAGAGAGATTGTATTTACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGTCACATGGCTGCAAACTGTGAAGGAAAGGCAAAAAGGAAGTCAGGAGAGTTTGATGAAAAAGGAGAGGCTATTGTGGCCAAAAAGCCCTACCAGtttcTGAATATTTGGACTCTGAGGGAATATTTGGAGTATGAGATGAGAATACCTAATCCTCCTTTCGAGATTGATTTTGAATGCATTGTGGATGATTTTATCTTCATGTGTTTTTTTGTTGGAAACGATTTCCTACCACATATGCCTACACTAGAGATTCGTGAGGGTGCAATTAACTTGCTGATAGCAGTATACAAGAAGGAATTTAGGGAATTGGGTGGTTATTTAACCAATGGATGCACGCCAAATTTGAGCAGGATAGAGCACTTCATTCAAGCTGTCGGATTTTATGAAGATAAAATTTTCCAGAAAAGAGCTCGATTGCATCAGCGACAAACGGAGAGAATAAAGCGGGAAAAGGCACAGGCAAGAAGGGGAGACGATGTTGAGCCTCAATTTCAACCAGAGTCTTTGGTTGCAGTTTCACGATTCCATGGTTCTCGTCTTGCTTCTGCTCCAACTCCTTCACCATTTCAACAATCCGGGCATTATAATTCTCAAGTGTCCTCATCAGTTAGAAAAGACAATAAAGAAGCCTTTGAGAGGCCTGGTAAAGTTGCTAGGTTATCTTCAGGAGCAACTGTTGCTGCTGCTATTATTGAAGCTGAGAGTAGTCTTGAAATAGATGTTGAAGATAATAAAGACGAATTGAAAACAAAATTGAAGGAGATACTTCGAGAGAAATCTGATGTATTCAACTCAAAAGACGCTGGAGAAGACAAGATTAAGTTGGGAGAACCAGGATGGAAAGAGAGGTATTATGAGGAAAAATTTTATGCTAAATCTCCTGAGGAACTTGAAGCAATACGGAAAGATGTTGTCTTGAAATACACTGAAGGCCTATGTTGGGTGATGCACTATTACTATGAAGGTGTTTGTTCTTGGAATTGGTTTTATCCTTATCATTATGCCCCCTTTGCATCTGATCTCAAGGGCCTCAGTGAACTTGATATTAACTTTAAGCTGGGTACTCCATTCAAACCATTTGACCAGCTTCTAGGGGTCTTTCCTGCTGCAAGCTCTCATGCACTTCCTGAGCCATATAGGAGACTTATGACAGATCCAAACTCACCAATCATTGATTTTTATCCAATTGACTTTGAAGTGGACATGAATGGAAAACGCTTTGCTTGGCAGGGTATTGCGAAGTTGCCTTTTATTGATGAAGCGCGTCTTCTTGCGGAAGTTCACAAAATTGAAAACTTGTTAACACCAGAGGAAAAGAGACGGAATGCAATTATGTTCGACTTGCTCTTTGTGAATTCTTGCCATCCTCTCTCTGCATGCATAAGTACACTTGACAACAAGTGTAAAAACATGCCAAACACTGAACGAGCTGTGGTCAAGGAAAAAATCGATCCCAAAGAAAGGGATACATGCAGTGGTGGAATGAATGGTTACCTATCCTTATGTGCTGGAGAACCTTGCCCTCCTATCTTTAGGTCTCCTGTTGCAAGCATGGAAGACATCATGGACAACCATGTTATGTAA 2394 0.4269 MGVPAFYRWLAEKYPMVVVDAIEEEPVVIEGVQIPVDTSKKNPNDIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEARLREEFEKEGRKLPPKEESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGYDPNTRHCLYGLDADLIMLALATHEIHFSILREIVFTPGQDKCFLCGQMGHMAANCEGKAKRKSGEFDEKGEAIVAKKPYQFLNIWTLREYLEYEMRIPNPPFEIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFRELGGYLTNGCTPNLSRIEHFIQAVGFYEDKIFQKRARLHQRQTERIKREKAQARRGDDVEPQFQPESLVAVSRFHGSRLASAPTPSPFQQSGHYNSQVSSSVRKDNKEAFERPGKVARLSSGATVAAAIIEAESSLEIDVEDNKDELKTKLKEILREKSDVFNSKDAGEDKIKLGEPGWKERYYEEKFYAKSPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKGLSELDINFKLGTPFKPFDQLLGVFPAASSHALPEPYRRLMTDPNSPIIDFYPIDFEVDMNGKRFAWQGIAKLPFIDEARLLAEVHKIENLLTPEEKRRNAIMFDLLFVNSCHPLSACISTLDNKCKNMPNTERAVVKEKIDPKERDTCSGGMNGYLSLCAGEPCPPIFRSPVASMEDIMDNHVM 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00352 797 Gene3D - 606 714 - -
Cca05g00352 797 PIRSF Exonuclease_Xrn2 1 797 IPR017151 GO:0004534|GO:0005634|GO:0006139
Cca05g00352 797 Coils Coil 122 142 - -
Cca05g00352 797 Coils Coil 508 528 - -
Cca05g00352 797 MobiDBLite consensus disorder prediction 453 474 - -
Cca05g00352 797 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Cca05g00352 797 CDD PIN_XRN1-2-like 51 312 - -
Cca05g00352 797 Pfam Xrn1 helical domain 325 797 IPR041412 -
Cca05g00352 797 Gene3D - 1 135 - -
Cca05g00352 797 Gene3D - 147 374 - -
Cca05g00352 797 MobiDBLite consensus disorder prediction 449 478 - -
Cca05g00352 797 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Cca05g00352 797 PANTHER 5'->3' EXORIBONUCLEASE 1 797 IPR027073 -
Cca05g00352 797 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Cca05g00352 797 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Cca05g00352 797 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Cca05g00352 797 PANTHER 5'-3' EXORIBONUCLEASE 1 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00352 Cca-Chr5 7743053 7755937 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00352 05 7743053 7755937 Cca05g00352 05 7743053 7755937 ECH