Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00351 ATGGACCGACGCTGGCCATGGAAAAAAAAATCATCGGACAAGGCTGTGCTTGAGAAAGCGGCTGCGGAATTGGACTCTGCTGCGGGTGCTTCCACTCAGGTTAATCAGAAGCCGAGCTACGTCCAAATCTCCGTAGAGTCATATTCCCATCTGACTGGTTTAGAGGATCAAGTGAAGACATATGAAGAAAAAGTTCAGACACTGGAGGATGAGATCAAGGAATTAAATGAAAAACTGTCAGCAGCAAATTCAGAGATAAATACTAAGGAAAGCTTGGTAAAACAGCATGCTAAAGTAGCAGAAGAGGCTGTCTCAGGTTGGGAAAAGGCCGAAGCAGAAGCTTTGGCATTGAAGAACCATCTGGAAACTGTAACTCTTTCAAAACTCACTGCTGAGGACCAGGCATCGCAGTTAGATGGTGCTCTTAAAGAGTGTATGCGACAGATAAGAAACCTGAAGGAAGAACATGAACAGAAAATACAGGAAGTTGCTCTCACAAAAAACAAGCAATTGGACAAGATTAAGGGTGAGTTTGAGGCTAAGATTCACAACTTTGAACAGGAACTCCTCAGGTCTGCTGCTGACAATGCAGCTCTGTCAAGGTCATTGCAAGAGCGCTCTAATATGATAGTCAATTTAAGTGAAGAAAAAGCTCATGCGGAGGCTGAAATTGAGCTTCTTAAGGGCAACATTGAATCATGTGAAAGAGAAATCAATTCACTCAAATATGAGCTTCATGTTATTTCCAAAGAGCTTGAGATTCGCAATGAAGAGAAGAACATGAGTATGAGGTCCGCGGAAGTTGCTAACAAGCAGCATATAGAGGGTGTTAAAAAAATTGCCAAATTAGAGGCTGAGTGCCAAAGATTACGTGGTCTAGTGCGGAAAAAGTTACCTGGTCCAGCTGCACTTGCACAAATGAAGCTAGAAGTTGAAAGTCTTGGTCGAGAATATGGAGACACTCGATTAAGGAAGTCTCCTGTCAAACCTGCTAGTCCTCACCTGTCCCCATTGCCTGGTTTCTCCCTAGATAATGCACAGAAGTTCCACAAAGATAATGAATTCCTTACAGAGCGTTTATTGGCAATGGAAGAAGAAACAAAGATGCTCAAAGAAGCTTTGGCAAAACGTAACAGTGAATTGCAGGCTTCAAGGAGTATGTGTGCTAAAACTTTGAGCAAACTTCAAGTTTTGGAAGCACAAGTTCAGATGGGTAATCAGCAGAAGGGATCTCCTAAATCAATCATCCATGTAAACCATGAAAACATATACAGTCAAAATGTCAGCAATGCACCAAGCTTGATCTCCATGTCTGAAGATGGAAATGATGATGTGGTAAGTTGTGCCGAGTCTTGGTCTACAGCAATACTCTCTGAGCTATCCCAATTCCCTAAAGAAAGGAATACTGAGGAATTAAGTAAATCTGATGCCACTAAGAAGTTGGAACTAATGGATGACTTTCTGGAGGTGGAGAAATTGGCCCGATTATCAAATGATTCCTGTGGAGTTTCATTTACTTCAAACAATATAACAAATGAAACTGTGACCAATGATGTATCAGAAGTCAGTACAGTGGAAGATGTTCCCTCTAACCCCAAAGAGAATAGTGATCCAAATCCATTGCCAAGTGAGGTGTCTTCTGCTGAAGAATTGTCATCACCTGATCCCCAATCTGATGTTCGTGGCTTGTCACTTGCAGAGCTTCAATCAAGGATATCATCAGTGTTTGAGTCCATGGCGAAGGATGCTGATATGGAGAAGATCCTGAATGATATCAAACACATTCTTAAAGAGGCATGTGACACTTCCATCCAGGACTCTCTATCTGCCATTCCCCGTGATGACAAACCTTCTGATATTACATGTGATAACCAGGGTAATACTGAAGATGCTGGCTTAAATGCTGAAAAAGATATAATTTCATCCCAGCAAACTACAGAATATGTGCAGATAACTTTGGATTTAGAAGCTGCAATTTCCCAAATTCATGACTTTGTCTTGTTCCTAACCAAAGAAGCAATGACAGCACATGATATATCTTCTGATGGAGATGGAATAAGCCAAAAGATGGAGGAGTTATCTGTTACTTTTAATAAAGTTACATCCAATGAAGCAAGTTTGCTACAGTTTGTTGTAGACCTGTCTAATGTTCTAGCCAAGGCAAGTGAATTCAGATTCAATATCCTTGGTTATAAGGGTACGGAAGCTGAAAGCAATAGTCCTGATTGCATTGATAAGATTGCTCTGCCTGAAAATAAATTAGTTCAAGACGATTCATCAGGAGAGAGATATCAAAATGGTCATTCCCATATTCTTAATCCCTGTTCTGATCCTGAGGTTCCCGATGATGGAAATTTGGCCTCGGGCTATGAAACAAATGGGACGTCACAGAAGTTCTCAATGGAGGACTTTGAAGAATTGAAATTAGAGAAAGAGAAGGCAGTCGCTGATCTGTCAAAGTGTGCTGAAAATCTTGAAATTACGAAGTCTCGGTTACTGGAGACAGAGCAACATCTAGCTGAAGTTAAATCACAATTGGCTTCTGCTCAAAGATCAAACAGCCTGGCTGAAACGCAATTAAAATGTATGACAGAATCGTACAGGTCAATTGAAACACGTGCAAAGGAGTTTGAAACTGAGCTTAATCATCTGCGCATGAAGACCGAAACTCTGGAGAATGAACTTGAAGATGAAAAGAGGGTTCATGAAGAAGCTTTGGCCAAGTACAGGGAGCTAGAAGAACAATTACAAAGGAATGAAAACTCAGCTGCTGATAATGACATCAAGACTAAGCAGGAGAGAGACTTGGCAGCTGCTGCTGAAAAGCTAGCAGAGTGTCAGGAAACCATATTTCTTCTTGGCAAACAGTTAAAGTCTCTGCATCCTCAAACAGAGCCAATGGGATCTCCGTATTCAAAGGCTGAAGGCTTCACAGAGCTTGAACCTTACTCTAGAAGCCAAAATTTGCAAGATCAGGCTGAGATGGACAGTGCTACTTCTGCATTTGTGCAAAGACTGGGTGGGGAATCCCCCTTACATTTTGCCAACACTTTACACAGTCCACCACATAATGAGTCAAACTTTCCAGCCATATCTCCTGTACAGAATCCAAACCACAACCCTATGAAGTCAACCTCTTCTTCAGCTTCGTCCACTCCTACACCAGAAAAACACACCCGAGGTTTTAGCAGATTCTTTTCATCAAAAGGAAAAAACGGTCATTGA 3225 0.4149 MDRRWPWKKKSSDKAVLEKAAAELDSAAGASTQVNQKPSYVQISVESYSHLTGLEDQVKTYEEKVQTLEDEIKELNEKLSAANSEINTKESLVKQHAKVAEEAVSGWEKAEAEALALKNHLETVTLSKLTAEDQASQLDGALKECMRQIRNLKEEHEQKIQEVALTKNKQLDKIKGEFEAKIHNFEQELLRSAADNAALSRSLQERSNMIVNLSEEKAHAEAEIELLKGNIESCEREINSLKYELHVISKELEIRNEEKNMSMRSAEVANKQHIEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGREYGDTRLRKSPVKPASPHLSPLPGFSLDNAQKFHKDNEFLTERLLAMEEETKMLKEALAKRNSELQASRSMCAKTLSKLQVLEAQVQMGNQQKGSPKSIIHVNHENIYSQNVSNAPSLISMSEDGNDDVVSCAESWSTAILSELSQFPKERNTEELSKSDATKKLELMDDFLEVEKLARLSNDSCGVSFTSNNITNETVTNDVSEVSTVEDVPSNPKENSDPNPLPSEVSSAEELSSPDPQSDVRGLSLAELQSRISSVFESMAKDADMEKILNDIKHILKEACDTSIQDSLSAIPRDDKPSDITCDNQGNTEDAGLNAEKDIISSQQTTEYVQITLDLEAAISQIHDFVLFLTKEAMTAHDISSDGDGISQKMEELSVTFNKVTSNEASLLQFVVDLSNVLAKASEFRFNILGYKGTEAESNSPDCIDKIALPENKLVQDDSSGERYQNGHSHILNPCSDPEVPDDGNLASGYETNGTSQKFSMEDFEELKLEKEKAVADLSKCAENLEITKSRLLETEQHLAEVKSQLASAQRSNSLAETQLKCMTESYRSIETRAKEFETELNHLRMKTETLENELEDEKRVHEEALAKYRELEEQLQRNENSAADNDIKTKQERDLAAAAEKLAECQETIFLLGKQLKSLHPQTEPMGSPYSKAEGFTELEPYSRSQNLQDQAEMDSATSAFVQRLGGESPLHFANTLHSPPHNESNFPAISPVQNPNHNPMKSTSSSASSTPTPEKHTRGFSRFFSSKGKNGH 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00351 1074 Coils Coil 135 188 - -
Cca05g00351 1074 Coils Coil 346 373 - -
Cca05g00351 1074 MobiDBLite consensus disorder prediction 1012 1074 - -
Cca05g00351 1074 SUPERFAMILY Tropomyosin 804 965 - -
Cca05g00351 1074 Coils Coil 51 92 - -
Cca05g00351 1074 MobiDBLite consensus disorder prediction 522 560 - -
Cca05g00351 1074 PANTHER FILAMENT-PLANT-LIKE PROTEIN 1 1074 - -
Cca05g00351 1074 Coils Coil 203 251 - -
Cca05g00351 1074 MobiDBLite consensus disorder prediction 609 631 - -
Cca05g00351 1074 Coils Coil 804 824 - -
Cca05g00351 1074 Pfam Filament-like plant protein, long coiled-coil 89 967 IPR008587 -
Cca05g00351 1074 Coils Coil 832 949 - -
Cca05g00351 1074 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 1074 - -
Cca05g00351 1074 MobiDBLite consensus disorder prediction 1017 1058 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00351 Cca-Chr5 7728531 7734543 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00351 05 7728531 7734543 Cca05g00351 05 7728531 7734543 ECH
Cca05g00351 05 7728531 7734543 Cca07g00286 07 3746593 3751489 PCT