Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00350 ATGTCGTCGAAATGCAGCCAAATAAGGCACATTGTGCGGCTCCGGCAGATGCTGCGGCGGTGGCGCAACAAGGCCCGGATGTCGGCGAGGCGCGCGCCCTCGGACGTGCCGGCGGGGCACGTGGCGGTGTGCGTGGGCAGGAACTCGACGAGATTCGTGGTGCGCGCGACCTACCTGAACCACCCGGTCTTCAAGAAGCTTCTCCTCCAGGCGGAGGAAGAGTACGGGTTCTCCAACGACGGTCCCTTAGCCATCCCCTGCGACGAAACCCTCTTCCAGGAGATTCTCCGCTTCATCTCCCGAACCGAATCCTCCAAACCCAACCGCTTCTTCAacctcgaactcgacgacttccgccgacactgccacctcgccatcgccacctggccCGACTCTCGACCGCTCCTGCACCTGCACGGCCCCTCTCACTCTCACAACACCTTTTGCTAA 450 0.5444 MSSKCSQIRHIVRLRQMLRRWRNKARMSARRAPSDVPAGHVAVCVGRNSTRFVVRATYLNHPVFKKLLLQAEEEYGFSNDGPLAIPCDETLFQEILRFISRTESSKPNRFFNLELDDFRRHCHLAIATWPDSRPLLHLHGPSHSHNTFC 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00350 149 Pfam Auxin responsive protein 13 98 IPR003676 GO:0009733
Cca05g00350 149 PANTHER SMALL AUXIN-UP RNA-RELATED 5 136 - -
Cca05g00350 149 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 5 136 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00350 Cca-Chr5 7673664 7674113 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00350 05 7673664 7674113 Cca05g00350 05 7673664 7674113 ECH
Cca05g00350 05 7673664 7674113 Cca07g00287 07 3767510 3768248 PCT