LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g00345	ATGATGGCTTCCGTAGAAGAAAAGATTAAAACCGGAggagttggtgttggagttggcggaggaatggttgttggGGGTCAAAGTCTTGTTGCTGAGATGAAACTGCTGAAAGAAATGCAGGAACATTCTGGGTTCAGAAAGACTTTGAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTGTCACTACCTCAGGTTGGGAGTCTTGTGTTTTACTTCCCTCAGGGACATAGTGAGCAGGTGGCAGCTTCTACTAGAAGAACAGCAACCTCGCAGATTCCAAACTACCCCAATCTTCCATCTCAGTTGTTGTGTCAAGTTCAAAATGTCACACTGCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAACCGCTGAATTCTGAAAAAGAAGTCTTTCCCATATCTGATTTTGGACTAAAGCACAGTAAACATCCCAGCGAGTTCTTCTGCAAAACTTTGACTGCTAGTGATACAAGCACGCATGGCGGCTTTTCGGTTCCTCGCAGGGCAGCAGAGAAGCTCTTTCCTCCGTTGGATTACACTATTCAACCCCCAACTCAAGAACTCGTTGTTCGAGATTTGCATGACAATACCTGGACATTTCGACATATATACCGCGGTCAACCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAAATCTCAATTGCGAGTTGGCGTGAGGCGCGTTAATCGTCAACAGACAACTCTGCCATCATCAGTGCTTTCTGCTGATAGCATGCACATTGGTGtgcttgctgctgcagctcatgctgctgcCAATCGAAGTCCATTTACTATTTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCGCTGGCTAAATACAGAAAATCTGTATTTGGGACTCAGGTCTCAGTTGGTATGAGATTTGGCATGATGTTTGAGACTGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGTATTAGTGACGTAGATCCCTTAAGGTGGCCTGGTTCTAAATGGAGAAATATTCAGGTGGAGTGGGATGAACCAGGGTGTGGTGATAAGCAGAATAGAGTTAGTGTATGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTCCCTTCTTTGACTTCAAGTCTGAAACGGCCATTACAATCTGGACTTTTAGAAAATGAGTGGGGAATGTTAAGAAGACCTTTTATAAGAGTTCCAGAAAATGGAACTATGGAGCTCTCTAATTCAATGCCAAATCTCTACTCAGAACACCTGATGAAAATGCTTTTTAAACCCCAGCTTATGAACAACAATGGAGCATTTTTATCTGTCATGCAACAAGAATCTGCAGCTTCAAGAGCTCCCTTGCAAGATATGAAGGCCACGCTGGCAGCAGAGAGCCTGAAAGCTCAACTTGCAAGTACAGAGAACATGCCACTGAAAAATCTACATTCTCAATCTATCCCTGACCAAGCCTTAAACATGCAATCAGTTTTGAAAAGTGATCAAATTGAAAAATTGCATCCTCTGGCCAAAATTGACAATCATTTGCCTTGTGGAGCAGTTACTGACAAGTCAAAATTAGAATGTGAGGTACTACCTGATCATATTGTTGATTACCCTTCCATGGAAGGCTGCATCCTAGAAAAGGTTGCAGCAAATCCTGTTAACCAGCAAGGCCTACCAAGCCAATTTACATTCCATAATCAAAACCAGAGTCCACTACTTCCTCAATCTAGTCCATGGCCTATGCAACCTCAGCTAGAATCATCCTTACCCCATCCTCAAATGATTGACATGGCTCAAGCTGATTCTGCTTTGGCAAATGGCATGATTCCTCAACTTGACATTGATGAATGGATGGCGTATGCTTCTTCCCAACCTTTTGTTGGGCAGAACAAATCAACTGGACCTTTATCAGATTTGCAAGATCATGCTTCACTTCAACCTCAAGCAATGAACCCCCCTTTACCTTCAACAAACCAAGAAGTGTGGGATCATTATGTCAAGAACTTAAAGCTCTTATCTCAACCAGACCAGATAACATCTATCACTCAGCCAGGGATGTATGGCCTCAATGGCATACCTAGTTCAAACAGTTTGAGGGATCTTTCGGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAATGTTGATGTTAGTAACAGTGTAGGCACCACCATGGTTGATCCTTCTACTTCAAGCACCATTTTGGATGAGTTTTGCACAATGAAGGACAGAGAATTCCAGACACCACAAGATTGCATGGTGGGCAACTTGAGTTCAAGCCAGGATGTCCAGTCTCAGATAACATCTGCAAGTCTAGCTGAGTCACATGCATTTTCTCTGAGAGACAACTCGGGTGGTACTTCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTTCTGCAGAATAACTCATGGCAGCAAGTACCTGCTCCCATCCGAACCTACACAAAGGTGCAAAAGGCAGGTTCTGTAGGAAGATCAATTGATGTCACTACTTTCAAGAACTATGAAGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTCGATGGTCTGCTGAATGACACTAAAGGTTCAGGATGGAAATTGGTGTATGTAGATTATGAGAATGATGTTCTTCTTGTTGGGGATGATCCTTGGGAGGAATTTGTTGGCTGTGTCCGCTGCATCAGAATTTTATCGCCTTCAGAAGTTCAGCAGATGAGTGAAGAAGGGATGAAGATTCTAAACAGTGGAGCTTTGCAAGGGATGAATGTTTGA	2823	0.4194	MMASVEEKIKTGGVGVGVGGGMVVGGQSLVAEMKLLKEMQEHSGFRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPISDFGLKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGLLENEWGMLRRPFIRVPENGTMELSNSMPNLYSEHLMKMLFKPQLMNNNGAFLSVMQQESAASRAPLQDMKATLAAESLKAQLASTENMPLKNLHSQSIPDQALNMQSVLKSDQIEKLHPLAKIDNHLPCGAVTDKSKLECEVLPDHIVDYPSMEGCILEKVAANPVNQQGLPSQFTFHNQNQSPLLPQSSPWPMQPQLESSLPHPQMIDMAQADSALANGMIPQLDIDEWMAYASSQPFVGQNKSTGPLSDLQDHASLQPQAMNPPLPSTNQEVWDHYVKNLKLLSQPDQITSITQPGMYGLNGIPSSNSLRDLSAESNNQSEICVNVDVSNSVGTTMVDPSTSSTILDEFCTMKDREFQTPQDCMVGNLSSSQDVQSQITSASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKILNSGALQGMNV	940

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g00345	940	Pfam	B3 DNA binding domain	155	256	IPR003340	GO:0003677
	Cca05g00345	940	ProSiteProfiles	B3 DNA-binding domain profile.	155	257	IPR003340	GO:0003677
	Cca05g00345	940	Gene3D	-	831	923	-	-
	Cca05g00345	940	Gene3D	-	153	256	IPR015300	-
	Cca05g00345	940	ProSiteProfiles	PB1 domain profile.	834	918	IPR000270	GO:0005515
	Cca05g00345	940	Pfam	Auxin response factor	281	364	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Cca05g00345	940	SUPERFAMILY	DNA-binding pseudobarrel domain	143	284	IPR015300	-
	Cca05g00345	940	PANTHER	AUXIN RESPONSE FACTOR 5	37	938	-	-
	Cca05g00345	940	CDD	B3_DNA	154	255	IPR003340	GO:0003677
	Cca05g00345	940	Pfam	AUX/IAA family	831	921	IPR033389	-
	Cca05g00345	940	SUPERFAMILY	CAD & PB1 domains	836	913	-	-
	Cca05g00345	940	Gene3D	-	319	391	-	-
	Cca05g00345	940	SMART	B3_2	155	257	IPR003340	GO:0003677
	Cca05g00345	940	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	37	938	IPR044835	GO:0003677\|GO:0006355\|GO:0009725

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g00345	Cca-Chr5	7481037	7486966	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Cca05g00345		AUX_IAA	6e-11	CL0072

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca05g00345	05	7481037	7486966	Cca05g00345	05	7481037	7486966	ECH