Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00344 ATGGGTTCTGTTTCTCTGAAGATAGGAGATGGAACCGCAAGATTCCAGAGAGCAACACTGTGTTCTTCAGCAGTTAACATTCTCATGATATTTTCTGTTATCACCACCAACCTCTTCGCCCTCTACGCCTTCACTTCCCCAAAACAGCCCCATCACTTGCTCCACCACCATGCCCACAAGAACATTTCCCTCATCTCTGAACAAGTCTCACTCATCCTCAGAGAGATCGACTTGTCCCAAAAGAAACTTGCCCAGATGGAGAAAGAGCTTCTGGGCTACGAAAGCCTCGATCTTTCGAGGCCCAACATTGCCACAGAGCTCAAACTCTTCCTAACCCGCCACCAGCTCCCTCTGGGTAAGGACTCAAGAACCGGGATCACTGAGATGGTGCCTTCTGTGGGCCACACGTGCGAGAAAAATTCAGACTTGCTGTCCCAGTTCATGAGTTACAAGGCTTTTGGGCCTTGCCCTGATGATTGGAGTGTGGCCCAGAAGCTGATCCTAAGAGGGTGTGAGCCCTTGCCTAGGAGGAGGTGCTTTGCCAAGACTATTCCAAAATCAGGTTTGTTCCCCTTTCCTGATTCTCTTTGGAAGCCTGTTGGTAACAAGACTGTTAATTGGAGTGGCCTTGGTTGCAAGAATTTTGAGTGTTTGAATGGTCGGAAGTTGAGTAGGGAATGCATTGGTTGCTTTGATTTGGTCCATGGGAATGAGAATGTTAGGTTTGTTAGAGCTAAGAGTAAGAATGATTTTGTTGTTGATGATGTTTTGGCCTTGGGTGGTGGAGGGGTTAGGATAGGGCTTGACATTGGTGGAGGGTCTGGATCCTTTGCTGCTAGAATGGCTGAGAGGAATGTCACTGTGGTTACTAGTACTCTCAATGTTGATGCCCCCTTCAGTGAGTTCATTGCTGCAAGGGGGCTTTTCCCTCTCTACTTGAGCTTGGATCATAGGTTCCCTTTCTTTGATAATGTGTTTGACTTGGTACATGCTTCAAGTGGCttggatgttggagggaagattgagaagttggagtttttgatgtttgatgttgATAGGGTCTTGAGGGCTGGTGGCTTGTTTTGGCTGGATAACTTCTTCTGTGCCAATGAGGCGAAGAAACAAGCTTTGACTCGGTTGATCGAACGATTCGGATATAAGAAGTTGAAATGGGTTGTGGGGGAGAAGGTTGATAGTGTTGGCTCTGGCAAACCTGAAGTTGTGTTGTCTGCTGTTCTTCAGAAACCTATTAGAGCATAG 1260 0.454 MGSVSLKIGDGTARFQRATLCSSAVNILMIFSVITTNLFALYAFTSPKQPHHLLHHHAHKNISLISEQVSLILREIDLSQKKLAQMEKELLGYESLDLSRPNIATELKLFLTRHQLPLGKDSRTGITEMVPSVGHTCEKNSDLLSQFMSYKAFGPCPDDWSVAQKLILRGCEPLPRRRCFAKTIPKSGLFPFPDSLWKPVGNKTVNWSGLGCKNFECLNGRKLSRECIGCFDLVHGNENVRFVRAKSKNDFVVDDVLALGGGGVRIGLDIGGGSGSFAARMAERNVTVVTSTLNVDAPFSEFIAARGLFPLYLSLDHRFPFFDNVFDLVHASSGLDVGGKIEKLEFLMFDVDRVLRAGGLFWLDNFFCANEAKKQALTRLIERFGYKKLKWVVGEKVDSVGSGKPEVVLSAVLQKPIRA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00344 419 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 260 384 IPR004159 GO:0008168
Cca05g00344 419 Gene3D Vaccinia Virus protein VP39 237 399 IPR029063 -
Cca05g00344 419 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 1 418 - -
Cca05g00344 419 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 248 386 IPR029063 -
Cca05g00344 419 Coils Coil 69 96 - -
Cca05g00344 419 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 1 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00344 Cca-Chr5 7473784 7475621 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00344 05 7473784 7475621 Cca05g00344 05 7473784 7475621 ECH
Cca05g00344 05 7473784 7475621 Cca07g00288 07 3780963 3782566 PCT