Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00343 ATGGCTGTGGATAATCCTGAGGATGGATTGAAGAAGCTAGAATACTTGTCGTTGGTGTCGAAGGTGTGCACTGAATTGGAGTCCCACACTGGCACCGGTGACAAGGTTCTCGCCGAGTTCATCACCGAGTTGGGTCGATCATCGGAGAACGTTGAGGAATTCGACACGAAGCTGAAGGAGAACGGTGCGGAGATGCCGGATTACTTTGTCCGAACGCTCCTCACAATTATTCACGCCATTCTCCCTCCCAAGCCCAAGGATTTGAAGAAGGAGAAAGAGAGTAGCACCGGCAAGACCAAGTTCAAGGCTCTGGCTATCGCAGACGATAGAGACCGGGCCAAGGAGCTTCAGAAGGAGTTAGAATCTGAGGCCAGAGGAAAGCAGAAAGAACGAATTGAGGAAGATGATGGGTACAGAGATAGAGATAGGGATAGGAGAGATAGGCGCAGAGATAGGTATGGAAGAGACAGAGATGATGAAGATGATAGGAGGGATTACAGCAGAAGAGGAAGAGATAGAGATGATGAAGATGATAGAAGGGATCATGGAAGAAGGGGAAGAGATAGAGATGATGAAGATGATAGAAGGGGTCAGGGCAGAAGGAGAAGAGATAGAGATGATGAAGATGATAGAAGGGATTATGGCAGAAGAGGAAGAGATAGAGATAGGTATGATGGGGATCAAGATAGACACGAGAGGCACAGAAGAGATGGATATGAAGAGGATGATGGGCGTGGAAGGGAGAATGGGGATAGAGATAGTGGTAATAGGAAGGGTTCACGGAATGGTTCTGGTGAACCTGAACTGTATGCAGTTTATAAAGGGAGGGTGTCAAGGGTAATGGAGACTGGATGCTTTGTCCAGTTAGATGACATTAGAGGGAAAGAAGGGTTGGTACATGTTTCACAGATGGCCACCCGGAGGATTACGAATGCCAAGGATGTTGTGAAGAGGGACCAGGAGGTTTATGTTAAAGTAATTTCGGTTTCAGGTCAGAAGTTGTCTCTTTCCATGAGGGATGTTGATCAGCATACTGGCAAGGATCTTCTTCCATTGAAGAAGAGCTCCGAGGATGATACACTGAGGATGAATCCGCAAGACTCAAAGGATGGGCCAGTTGCTAGGACGGGGCTTTCGGGTATCAGAATTGTGGAAGAAGATGATGTTGGTTCTTCACGGAGACCCTTGAAGAGAATGAGCTCTCCGGAAAGATGGGAAGCTAAACAGTTGATTGCTTCAGGTGTCTTGAGCGTTTCTGAGTATCCAACTTATGATGATGAGGGGGACGGATTGTTGTACCAAGAGGAAGGTGCTGAGGAGGAGCTTGAGATTGAGTTGAATGAGGATGAACCTGCCTTCTTACAAGGGCAGAGCAGATACTCAATGGACATGTCTCCTGTTAAGATTTTTAAGAATCCTGAAGGTTCTCTGGGTCGAGCTGCTGCACTCCAGTCTGCACTTATAAAGGAGCGTAGGGAAGTGCGAGAACAACAACAACGCACAATGCTTGATTCAATTCCAAAGGATCTCAATCGACCTTGGGAAGACCCTATGCCAGAGTCAGGTGAAAGGCATCTTGCTCAGGAGCTTAGAGGTGTTGGCTTATCAGCCTATGATATGCCGGAATGGAAGAAGGATGCCTATGGGAAAACCATTACCTTTGGGCAAAGATCAAAGCTTTCTATTCAGGAGCAGAGGCAGAGTTTGCCCATTTACAAGTTAAAAAAAGAATTGATTCAGGCTGTGCATGATAATCAGGTGTTGGTAGTCATTGGAGAAACTGGCTCAGGTAAGACTACTCAAGTCACACAGTATCTTGCTGAAGCAGGATACACTACAAGAGGCAAAATTGGATGTACTCAACCACGTAGGGTGGCTGCAATGTCAGTTGCGAAGAGAGTTGCAGAAGAGTTTGGTTGTCGATTGGGAGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACTGGACCAGATACTGTTATCAAGTACATGACAGATGGTATGCTTCTTAGGGAAATATTGGTTGATGAGAATCTGTCTCAGTATTCTGTTATAATGCTTGATGAAGCCCATGAACGAACTATTCACACCGATGTTCTATTTGGACTGCTGAAGCAGTTAGTAAAACGCAGACCAGAATTGCGGTTGATTGTCACATCTGCTACGCTGGATGCTGAGAAGTTTTCAGGATATTTCTTTAACTGTAACATCTTCACCATTCCTGGTAGAACTTTTCCTGTGGAGATACTTTATACCAAACAACCTGAAAGTGATTACCTAGATGCAGCTTTAATCACTGTCCTACAAATCCATTTGACAGAGCCTGAAGGAGACGTTCTTCTTTTCTTGACTGGTCAAGAAGAAATTGATTTTGCATGCCAATCTCTCTATGAAAGAATGAAAGGATTAGGTAAGAATGTTCCAGAGCTGATCATTTTACCAGTTTACAGTGCACTTCCTAGTGAAATGCAATCTAGGATATTTGAACCTGCTCCTCCTGGGAAAAGGAAAGTGGTTGTGGCTACTAACATTGCTGAGGCATCTTTGACTATTGATGGGATATTTTATGTGATTGATCCTGGATTTGCTAAGCAAAATGTTTATAATCCAAAGCAAGGTCTTGATTCCTTGGTAATAACTCCGATTTCACAAGCATCAGCCAAACAAAGAGCTGGACGTGCAGGGCGTACCGGACCTGGGAAGTGTTATCGCCTATATACTGAGAGTGCATATAGGAATGAGATGTCTCCCACCACAATTCCTGAGATTCAAAGGATAAATCTGGGGATGATTACTCTTAATATGAAAGCTATGGGGATAAATGATTTACTGTCCTTTGATTTTATGGATCCACCATCACCCCAAGCACTGATTTCTGCCATGGAGCAGCTTTACAGTCTTGGAGCATTGGATGAAGAGGGTCTTTTAACCAAATTAGGGAGAAAAATGGCAGAATTTCCCTTGGATCCACCATTGTCCAAGATGTTACTTGCAAGTGTAGACCTTGGATGCAGTGATGAGATTTTGACCATAATTGCCATGATCCAGACCGGAAATATTTTTTACAGGCCAAGGGAAAAACAAGCCCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCAGAGGGTGACCATCTTACCCTACTTGCTGTTTATGAGGCTTGGAAAGCCAAGAATTTTTCTGGACCCTGGTGTTTTGAGAACTTTGTTCAATCCCGATCATTGAGAAGAGCGCAGGATGTCAGAAAACAGCTCCTCACCATCATGGATAAGTACAAATTGGATGTCGTAAATGCTGGAAAAAACTTCACCAAAGTCAGGAAAGCTATCACTGCAGGATTCTTTTTCCATGCTGCTAGAAAGGACCCCCAGGAAGGTTACAGAACCCTTGTTGAGAACCAGCCTGTGTATATCCATCCAAGTTCAGCTTTGTTCCAGAGACAGCCTGACTGGGTCATTTACCATGAGCTTGTGATGACAACTAAGGAATATATGCGTGAGGTCACTGTCATAGACCCAAAATGGCTTGTTGAATTGGCTCCCAGATTCTTCAAAGTGGCAGATCCTACAAAGATGAGCAAGCGAAAACGTCAAGAGCGAATTGAACCACTATATGATAGATACCATGAGCCTAATTCGTGGCGTTTGAGTAAACGCCGAGCATGA 3669 0.4448 MAVDNPEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRSSENVEEFDTKLKENGAEMPDYFVRTLLTIIHAILPPKPKDLKKEKESSTGKTKFKALAIADDRDRAKELQKELESEARGKQKERIEEDDGYRDRDRDRRDRRRDRYGRDRDDEDDRRDYSRRGRDRDDEDDRRDHGRRGRDRDDEDDRRGQGRRRRDRDDEDDRRDYGRRGRDRDRYDGDQDRHERHRRDGYEEDDGRGRENGDRDSGNRKGSRNGSGEPELYAVYKGRVSRVMETGCFVQLDDIRGKEGLVHVSQMATRRITNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHTGKDLLPLKKSSEDDTLRMNPQDSKDGPVARTGLSGIRIVEEDDVGSSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDDEGDGLLYQEEGAEEELEIELNEDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDVLLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGMITLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVNAGKNFTKVRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00343 1222 CDD SF2_C_RHA 746 907 - -
Cca05g00343 1222 SMART S1_6 268 339 IPR022967 -
Cca05g00343 1222 SUPERFAMILY Nucleic acid-binding proteins 270 346 IPR012340 -
Cca05g00343 1222 Pfam S1 RNA binding domain 270 337 IPR003029 GO:0003676
Cca05g00343 1222 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1107 1182 IPR011709 -
Cca05g00343 1222 SMART ha2_5 960 1050 IPR007502 GO:0004386
Cca05g00343 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 559 1092 IPR027417 -
Cca05g00343 1222 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 684 693 IPR002464 -
Cca05g00343 1222 MobiDBLite consensus disorder prediction 347 385 - -
Cca05g00343 1222 ProSiteProfiles S1 domain profile. 270 339 IPR003029 GO:0003676
Cca05g00343 1222 PANTHER - 213 1222 - -
Cca05g00343 1222 Gene3D - 745 919 IPR027417 -
Cca05g00343 1222 PANTHER ATP-DEPENDENT RNA HELICASE 213 1222 - -
Cca05g00343 1222 SMART helicmild6 795 899 IPR001650 -
Cca05g00343 1222 MobiDBLite consensus disorder prediction 347 365 - -
Cca05g00343 1222 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 579 742 IPR014001 -
Cca05g00343 1222 Gene3D - 944 1043 - -
Cca05g00343 1222 CDD DEXHc_DHX8 564 742 IPR044762 GO:0000398|GO:0003724|GO:0005524
Cca05g00343 1222 Gene3D - 541 744 IPR027417 -
Cca05g00343 1222 Coils Coil 480 500 - -
Cca05g00343 1222 Pfam Helicase conserved C-terminal domain 767 899 IPR001650 -
Cca05g00343 1222 CDD S1_DHX8_helicase 270 346 - -
Cca05g00343 1222 MobiDBLite consensus disorder prediction 115 259 - -
Cca05g00343 1222 Pfam DEAD/DEAH box helicase 575 725 IPR011545 GO:0003676|GO:0005524
Cca05g00343 1222 Gene3D - 265 350 IPR012340 -
Cca05g00343 1222 MobiDBLite consensus disorder prediction 115 267 - -
Cca05g00343 1222 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 760 940 IPR001650 -
Cca05g00343 1222 SMART ultradead3 567 751 IPR014001 -
Cca05g00343 1222 Pfam Helicase associated domain (HA2) 961 1049 IPR007502 GO:0004386
Cca05g00343 1222 Coils Coil 110 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00343 Cca-Chr5 7462551 7469733 Dispersed/Transposed