Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00341 ATGGCCGTCCTTGTTCTTCTTTCTTTACTCCTACTACCTATCTTCATTCTCTTCATAATCCACACACACAAAAGAAACAGCGCCGCAAGAGCACCTCTtccaccgggacctccacctcttcctctcatcggcaacctccaccaccTCGACCAATCAGCCCCACATCGCTGCCTATGGCGTCTCTCCAAACTCTACGGTCCCCTCATGTCGCTGCGCGTCGGCACCGTACCAACCGTGGTAGTTTCCTCAGCCAAAATCGCCAAACAAATTCTGAAAACCCACGACCAAAACTTCGCGAGCAGGCCATCCTTCGTGGGCCAGAGAAAACTCTCCTACAACGGGCTGGACTTGGGCTTCGCTCCGTACGGCCCAAGCTGGAGAGAACTCAAGAAGCTCTGCATCATCCACCTCTTCAGTCAGCAGCGCGTGCAGTCCTTTCGCCCCATTCGAGAACACGAGGTCGCGCAAATGGTTCGGCGGCTTTCGCAGCTGCACGAGGAGGCTTACGTGAACCTCACCGAAACGGCGATGTCGTTGAACAACTCTCTCATATGCAGAATCGCGTTAGGGAAAAAGTACGGTCGCGAGTACGAGGAAGTTGTTAACCGGAGGAGCAGGTTGCAGGTTATGCTCAACGAGGCGCAGGCGGTGCTCGGGGAGTTTTACTTTTCGGATTATTTCCCGTTCTTGGGGTGGGTTGATAGACTCAGGGGAATTCTGTCGCGGCTTGATAAGACTTTCGAGGAGTTGGATGTGTTCTACGAACGCGTTATCCACGACCACATGGATTCCGCCAAGGGTGGAAAAACTAATGACAAAGAAGTGCCGGATATCATTGATATCTTTCTACAATTACTTGATAATCACTCGCTCTCGTTTCATCTCACTCTCGATCACATAAAGGCCGTGCTTATGAACATCTTTATAGCGGGAACGGATCCGCCTTCAGCGACATTAGTTTGGGCTATGAATGCACTGATGAAGAATCCCAACGTGATGAGCAAGGTTCAAGGGGAAGTGAGAGATCTATTCGGGCACAAAGATTTTATAAACGAAGAGGATGTTGAAAAGCTTCCTTATCTAAAAGCAGTGGTGAAGGAGACACTGAGACTCTTTCCACCGTCACCGTTACTTTTGCCTAGGGAAACGATGGAACGTTGCAACATAGAAGGGTACGAAATTGAACAGAAAACCGTAGTGCATGTTAACGTGTGGGCCATAGGAAGGGACCCCGAGTATTGGGAAAAGGCAGAGGAGTTTTGGCCCGAAAGGTTCCTTGGGAACTCGATGGAGTTAAAGGGGAAGGAGTTTGAGGTGATTCCGTTTGGGTCTGGACGGAGAATGTGTCCAGCGAAGCACATGGGAATGGTCAACGTTGAGCTTTCGCTGGCGAATCTCGTCCACACGTTTGATTGGGAAGTGGCTGAAGGGGTTAACAAGGAAGAGATGTTGGACACGGAAGTAAAACCGGGAGTGACTATGCACAAGAAAAATGATCTTTTCCTTCTGGCAAAGAAGTGGAAAACGTAG 1530 0.481 MAVLVLLSLLLLPIFILFIIHTHKRNSAARAPLPPGPPPLPLIGNLHHLDQSAPHRCLWRLSKLYGPLMSLRVGTVPTVVVSSAKIAKQILKTHDQNFASRPSFVGQRKLSYNGLDLGFAPYGPSWRELKKLCIIHLFSQQRVQSFRPIREHEVAQMVRRLSQLHEEAYVNLTETAMSLNNSLICRIALGKKYGREYEEVVNRRSRLQVMLNEAQAVLGEFYFSDYFPFLGWVDRLRGILSRLDKTFEELDVFYERVIHDHMDSAKGGKTNDKEVPDIIDIFLQLLDNHSLSFHLTLDHIKAVLMNIFIAGTDPPSATLVWAMNALMKNPNVMSKVQGEVRDLFGHKDFINEEDVEKLPYLKAVVKETLRLFPPSPLLLPRETMERCNIEGYEIEQKTVVHVNVWAIGRDPEYWEKAEEFWPERFLGNSMELKGKEFEVIPFGSGRRMCPAKHMGMVNVELSLANLVHTFDWEVAEGVNKEEMLDTEVKPGVTMHKKNDLFLLAKKWKT 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00341 509 Gene3D Cytochrome P450 26 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 PANTHER CYTOCHROME P450 83B1 9 506 - -
Cca05g00341 509 PANTHER CYTOCHROME P450 71B11-RELATED 9 506 - -
Cca05g00341 509 SUPERFAMILY Cytochrome P450 34 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 Pfam Cytochrome P450 34 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Cca05g00341 509 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca05g00341 509 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00341 Cca-Chr5 7378817 7380797 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00341 05 7378817 7380797 Cca05g00341 05 7378817 7380797 ECH