Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00340 ATGGAAGGTGTTGATCAAAGTAACATGAATCGAAATAGTTCTGCATTTGGTTCATCATCAGGAGCAAATCTCAGACCCTCAAATCGATTGAATGCTGTTGAGAATCAGAAACCCTATGGTATACCACCCTCACACCCCAATACCAATGTTTCACCTTCATCGCCTTATCCCCAATTTTTTGGCTCTCAATCCCAGTCCAATTCTGTTTCTCAGCGTTTAGGTTCTCCCAATTTGAGCCCTGCATCATCCCATGCTAGGTCTTTGTCTCAGCCCTCATTTTTCTCTCTGGATTCCTTGCCCCCTTTGAGTCCTTCCCCTTATAAAGAGCCCTTGGCAGCCACCTCCTTTTCTGACACAATTTCAACTGATGTTTCTGTGGAGGAAAGCTTGGGTACCTCTCATGCCCCTTCCTCTAACCGTGGCCATGCTCTTCAGCTTGGCCATTCTCTCCCCCCGCGTAAAGGGCATAGGCGCTCTAGCAGTGATTCCCCTTTAGGAATCTCTGATTATATTCAGTCTGTCCCCCAGTTGGTCCCCACCAGGGCTTGGAATGATCGTGAAAATTTGGCTTCTAGGGGAGGAAACTCTGGATTTGAGAAGCCGATTCAGTTGGTGTTAAAGGAACCATTTAAGGATATGGACCGTGTTGATGGCTTTAGTGGAGAACATATGGATGTGAGGAAAGAGGATGATTCACTGGATGATTTGTTTAGTGCATATATGAATTTGGACAATATTGATGGTCTGAATTTTTCTGGTGTGGAAGATAAGGATTTGGATAGCAGAACTAGTGGTTCTAAGACAGTTGAAAGCAGTGACAACGAAGTTGAGAGCCATGCAAATGGAAAGGCAACTGGTGCTCAAGGGGCTAGTTCAAGCTGTTCGGAAGAGAGGAGGGAAGGAGTGAAGAGGAGTTCTAATGGAGATATTGCACCTGGTTCTCGACACCGGAGAAGTTTCTCATTAGACAGCTCCATAGGAAATTTTTGTATTGGAGATGAGTCACCTAAGCTTCCTCCTTTGCAAAACCGAGTTGGTCAACACTCGCCTAGCAATTCCATAGATGGTAAGCCATCTGAAACAAGCATTGAGTTTGGAAATGGTGAATTCAGCTCTGAGGAGCTAAAGAAAATAAAGGAAAATGATAAGCTTGCTGAAATTGCCATGGCCGATCCTAAGCGTGCAAAAAGGATTTTGGCTAATCGTCTATCTGCTGCTCGCTCAAAAGAGCGAAAGATGCGATACATTTCTGAATTGGAGCTTAAGGTCCAAACACTTCAGACAGAGACAACCACATTATCTACTCAGTTTACCAAATTACAGATGGATAATTCAGAGCTTAAAAGTGAGAATAATGAGTACAAATTGAGGATTCAAGCCTTGGAACAGCAGTCCCAACTGAAAGATGCTCTGAATGAGACATTGGATGCTGAAGTGAGGCGTTTAAGACGTACTGTTGCAGAACTTGGTGGAGAGTCCCTCCTCTCAAGTCGCATGGCTCAACAGCTTTCTATTAGCCAACAAATGTTCCAGTTACAGCACCAGCAGCACCCGGGCCAGATTAGACAAGTTCAACTGCACAATAGCCATTCACAGGAACAGACACAGACTCAGTCACAGCTCCACAATGGAAAAACTACTGCCTATTGA 1650 0.4455 MEGVDQSNMNRNSSAFGSSSGANLRPSNRLNAVENQKPYGIPPSHPNTNVSPSSPYPQFFGSQSQSNSVSQRLGSPNLSPASSHARSLSQPSFFSLDSLPPLSPSPYKEPLAATSFSDTISTDVSVEESLGTSHAPSSNRGHALQLGHSLPPRKGHRRSSSDSPLGISDYIQSVPQLVPTRAWNDRENLASRGGNSGFEKPIQLVLKEPFKDMDRVDGFSGEHMDVRKEDDSLDDLFSAYMNLDNIDGLNFSGVEDKDLDSRTSGSKTVESSDNEVESHANGKATGAQGASSSCSEERREGVKRSSNGDIAPGSRHRRSFSLDSSIGNFCIGDESPKLPPLQNRVGQHSPSNSIDGKPSETSIEFGNGEFSSEELKKIKENDKLAEIAMADPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNSELKSENNEYKLRIQALEQQSQLKDALNETLDAEVRRLRRTVAELGGESLLSSRMAQQLSISQQMFQLQHQQHPGQIRQVQLHNSHSQEQTQTQSQLHNGKTTAY 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00340 549 Gene3D - 392 458 - -
Cca05g00340 549 MobiDBLite consensus disorder prediction 1 111 - -
Cca05g00340 549 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 391 454 IPR004827 GO:0003700|GO:0006355
Cca05g00340 549 MobiDBLite consensus disorder prediction 331 360 - -
Cca05g00340 549 MobiDBLite consensus disorder prediction 251 319 - -
Cca05g00340 549 SMART brlzneu 389 453 IPR004827 GO:0003700|GO:0006355
Cca05g00340 549 CDD bZIP_plant_RF2 394 466 IPR044759 GO:0003700|GO:0006355
Cca05g00340 549 Coils Coil 409 429 - -
Cca05g00340 549 Pfam bZIP transcription factor 393 451 IPR004827 GO:0003700|GO:0006355
Cca05g00340 549 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 60 545 - -
Cca05g00340 549 PANTHER BZIP TRANSCRIPTION FACTOR 60 545 - -
Cca05g00340 549 MobiDBLite consensus disorder prediction 124 171 - -
Cca05g00340 549 MobiDBLite consensus disorder prediction 342 360 - -
Cca05g00340 549 MobiDBLite consensus disorder prediction 41 99 - -
Cca05g00340 549 Coils Coil 437 492 - -
Cca05g00340 549 MobiDBLite consensus disorder prediction 514 549 - -
Cca05g00340 549 MobiDBLite consensus disorder prediction 124 144 - -
Cca05g00340 549 MobiDBLite consensus disorder prediction 278 295 - -
Cca05g00340 549 MobiDBLite consensus disorder prediction 1 34 - -
Cca05g00340 549 SUPERFAMILY Leucine zipper domain 393 448 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00340 Cca-Chr5 7343324 7347196 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca05g00340 bZIP_1 1.8e-10 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00340 05 7343324 7347196 Cca05g00340 05 7343324 7347196 ECH