Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00337 ATGACAGCAGCATCGCTTCTCCACCTCCTCCTCGTGGCCACCGCGGCGACCCTCTCcctccggcctccatcctccgccgcagccggcagcGGCCACTGGGAGGGCCTCCAGAAAAGCATCGGCATTGTGGCCATGCACATGCAGCTCCTCCACACGGACCACGTCCTCATCTTCGACCGCACCGACTTCGGCCTCTCCAACCTCTCCCTCCCCGACGGGCGCTGCCGCCGCGACCCCGCCGAAATGGTCGTCAAGACCGACTGCTCCGCCCACTCCCTGGAGTACGACGTCGCCACCAACGCCCTCCGCCCCCTCTTCGTCCAAACCAACGTCTGGTGCTCCTCCGCCTCCGCCGCCCCCGACGGCACCATAATCCAAACAGGCGGCTTCAACGACGGCGAGCGCAAAGTCCGGTCCTTCTCCCCCTGCCCCACCTGCGACTGGCAAGAACTCTCCGCCCCCCTCGCCGCCCGCCGCTGGTACGCCACCAACCACCTCCTCCCCGACGGCCGGCAAATCATCGTCGGCGGCAGACGCCAATTCAACTACGAATTCTACCCGAAATCACACACCACCGCCAAAAACACCTACTCCCTCCCCTTCCTCGTTCAAACCAGCGACCCTCACGAGGAAAACAACTTATACCCCTTCGTCTTCCTCAACGTGGATTCCACCCTCTTCATCTTCGCCAACAACAGAGCCATTCTCCTCGACTACACCAAAAACGTCGTCGTCAGAACTTTCCCCACTCTCCCTGGCTCTGACCCCAGGTCCTACCCTTGCACCGGTTCCGCTGTTCTCTTACCCTTCAAAACCTCATCTTTGGAACCTCAAGTTTTAGTTTGTGGCGGAGCCCCGAGAGGCGCTTATAATAACGCCAAAACGGGTAAGTTTCTCGGAGCTTTGAATACCTGCGGCCGGATCAAAATAACCGACCCGAATCCAAACTGGATCGTGGAAACAATGCCCAGAGGTAGACTCATGAGCGACATGGTTATCCTCCCAAACGGCAACGTTTTGATTGTTAATGGAGCCGGTTCAGGTAGCGCCGGTTGGGAATTCGGCCGCGACCCGGTTTTAACTCCGTTTCTTTATTACCCGAATAAACCAACCGGTTCCCGGTTTGAAACACTAAACGGGTCGAATACTCCTCGAATGTACCATTCCACTGCCGTTTTGCTTCGTGACGGGAGGGTTCTCGTTGCTGGGAGCAACCCTCACGTTGGTTATAATTTTTCCAATGTGCTTTTCCCCACGGAGCTTAGCGTGGAGGCTTTTCATCCCTCTTATTTGGAGGCCGCGTTTGATGACGTGCGTCCCCGAATCGCGTTTCCCGAGACGGGGACTAAAGTCGCGTATGGTCAGAAGGTGAGGGTGAGAGTCCACGTGGCGGGGGCGTTGGTTCGGAGTTTGGTTTCGGTGACGATGTTGTCGCCGCCTTTTAACACGCACTCGTTCTCCATGAATCAGAGGGCGCTCGTGTTGGAGCCTAGCGACGTGACAAACGTGGGAGGACCAACAACGTATGAGATTGAGGTTACCACACCCCAATCCCCCGTTCTTGCACCACCCGGTTTTTATCTTCTCTTTGTGGTCCACCAGGAAATTCCAAGCGAGGGAATTTGGATCCAGATAATTTGA 1641 0.5558 MTAASLLHLLLVATAATLSLRPPSSAAAGSGHWEGLQKSIGIVAMHMQLLHTDHVLIFDRTDFGLSNLSLPDGRCRRDPAEMVVKTDCSAHSLEYDVATNALRPLFVQTNVWCSSASAAPDGTIIQTGGFNDGERKVRSFSPCPTCDWQELSAPLAARRWYATNHLLPDGRQIIVGGRRQFNYEFYPKSHTTAKNTYSLPFLVQTSDPHEENNLYPFVFLNVDSTLFIFANNRAILLDYTKNVVVRTFPTLPGSDPRSYPCTGSAVLLPFKTSSLEPQVLVCGGAPRGAYNNAKTGKFLGALNTCGRIKITDPNPNWIVETMPRGRLMSDMVILPNGNVLIVNGAGSGSAGWEFGRDPVLTPFLYYPNKPTGSRFETLNGSNTPRMYHSTAVLLRDGRVLVAGSNPHVGYNFSNVLFPTELSVEAFHPSYLEAAFDDVRPRIAFPETGTKVAYGQKVRVRVHVAGALVRSLVSVTMLSPPFNTHSFSMNQRALVLEPSDVTNVGGPTTYEIEVTTPQSPVLAPPGFYLLFVVHQEIPSEGIWIQII 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00337 546 Pfam Galactose oxidase-like, Early set domain 439 545 IPR015202 -
Cca05g00337 546 PANTHER SECRETED PROTEIN-RELATED 26 545 - -
Cca05g00337 546 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 26 545 - -
Cca05g00337 546 Pfam Glyoxal oxidase N-terminus 45 284 IPR009880 -
Cca05g00337 546 SUPERFAMILY Galactose oxidase, central domain 94 432 IPR011043 -
Cca05g00337 546 SUPERFAMILY E set domains 435 545 IPR014756 -
Cca05g00337 546 Gene3D - 27 435 IPR037293 -
Cca05g00337 546 CDD E_set_GO_C 435 545 IPR015202 -
Cca05g00337 546 Gene3D Immunoglobulins 438 546 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00337 Cca-Chr5 7275757 7277860 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00337 05 7275757 7277860 Cca05g00337 05 7275757 7277860 ECH
Cca05g00337 05 7275757 7277860 Cca07g00297 07 3915226 3917137 PCT
Cca07g00296 07 3904003 3905792 Cca05g00337 05 7275757 7277860 PCT