Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00336 ATGGAGGGAGAAGATATTAGGTCTGGGATGAAGAAGAAGCGATCCAAGAAGGAAATTGGTTTTGACTCTGGTGATGACGAGCCCATTGGGTCAATCTTTAAGGTTAAAAGGTCCAGGAAGAAGGCTAGTTGTAGTAGTGATGCTGTTAGGGGAAAGGAGGATTTGGAGGGTATGGATGATAATGATACCTTGGCTAGCTTTAGAAAGAGGTTGAAGGGTCCTAAGAGAGATCAGGGATCTGGGGCCACAAGAGGAGCAAGTCCTGCTGCTTTGCCTGTGTCTGATGAAGATTTGGTTGCTTTGGGACCTAACGGTAAGGATGAGAAAAGGGTGGTGTCTGGTGATGTTGACATGCAGATGCGGGATTCATCTGATCAGCACATGGAGGGTTCCTTGTCTGCAATTTTCCACAAGGCACAGTCTAGTTCGGCTAGGAAATCTCGTGGGGGTTTGAAGCAGAAAAAGGTGATTCAGAATGTGGATAGTGGGATGAGCCCTGGTTGTGATGGTTTTGTAGAGGCTGTGGATTCTGTGGTTGAAAGTAGATCCGGATCTGCTTCTGGCTTAAAATTGGTTGAGGGGAATGTTGTGTCTGCTGATGCTTTGCCTCAAGCATCTGAACCGGCTTTCACATCTGTGGTGGATGATCAGAAGTGCGGTGATGGCGTTTTCCAAGAGGAAACTGTGAAGGGAGATTGCGAATCAGATGTTCCAGATGTCTGTCATGGAGATAGGCAGCAATTGTCTTGTGTACAGGTTGAGGATATTTGTTGTGCTTCTGACCAGAAGGTTGCATTGCAGGAAAGTGTTCTTGGTGAAAGTTTAGATAAGTTATCTTCCATGTCACATGATGAAACAGTTGATACTGCCTCTCTCTCAAAAATGGGAGAAGAGGTAAAAGGCTTTACTGAGGTCAGAGAGTCTGAGAATATATTGACTGATGAACTAGCACAAGTGTGTAACATTGCTTCAGAACGTGATGATTCTACTTTTGTGGTGCATGAAAATGTCTCAACTTCTGCTCATACCGAACCCTTTATATCAACTGAAAATATATTGAATGAGAGTAATAATATGTTTTCTGGAAAAGATTTCCGGGAGTTCTCAAGTAATGGCACTCTAAAATTATCTGGATCCCATTTGGAAGTAGATGGAGGTGGAAAATCAGAATCGGAGTTTGTTAATAGAAATTTATGTGATTTTAGTAGTTTAGATTCAAAGGCTGAAGTGCAAGATTTTGTTTTGGGTTTTTCACCTAAAAGAAATGATGCAACTTTTGGTGGTAGTTTATCTTCCATGGTGTCTAATGAAGCCAATGAAGCTGAATTGGCTGCCCTCTCAAATCACCCAGAGAAACCTCTAGAAGCTTTCAATATTCCAAAAGATTCTACTGCTTCAATTCAGAAATGTAGCTCAGTGTTAGATCCAATTCAATCTGATGGATCTTCTCTTCAATCTTCAATTCCTGATGAAAATGGGAACTCTGCAGAATACCATCCCTCTGTGCCTGATTTTGCTGATAATGATTGTAAGTTATCGAGCATTCCGCGTGTTATGCGAAAGGCAAAGATGCGTAAGCATGGAGACATGACATATGAGGGGGATGCTGATTGGGAGATTTTAATTAATGATCACGCTCTAAATGAAAGTCAAGTTATGGTAGATGGTGACCGCACTCTTAGAACAAGAATGAAGCATGAATCCTCTTTGAATACAGGTGAAGACTTTGAAAATGTTGCAGTAGTAGCAGTATCAGCTGGGCTGAAAGCCCGTAAAGCTGGTCCAATTGAGAAAATAAAGTTTAAGGAGATCTTGAAGCGCAAAGGTGGTCTCAAGGAATATTTGGATTGCAGAAATCAGATTTTAAGTCTTTGGAGCAGAGATGTCACACGTATTTTGCCTCTTGCTGAATGTGGAGTTAGTGATACTCATTCGGAGGATGGAAGTCCTCGGTCTTCTCTTATTAAGGAGGTCTATGCATTTCTTGATCAATATGGTTATATAAATGTTGGAATTGCTTCCCAGAAGGAGAATGTTGGAATTAGTGCAAAGCATTGTTATAAACTGGTAAAAGAAAAAGGTTTTGAGGAAAGTTCTGCAGCTTCAGTGGCAGACTCTGAAGATGGAGTTTCTTTTATTGTTGGTCAGACTAAAATGTCACATACTTCCAATGAGATTAACAATGGTCTTACAAAGAATTTTGAGGACCTAACAACTGAAGCTACAGAAGGTATGAGGTATGTTAATGAAGCGAAGATGGATTTATCAGACATGACACAGCAGGCTGAAAGAAAAAAAATTGATTACCAGGAAAATGATGGGATTCAGGATGGTATTGTAAATGTCACTGTTGACAGTTCCATTCCTTCTTCCATGTTTCCTGATTGCAGATTGACTTCTCTGGTAGCTACAGAGAAAAACAATGACTCCACCACCTGTATTAAATCTTCCTTAGGGGGTCAGGCAGGTGAACATCTGCAGTCTGATTTAGATCCTAGAAAGAGAGTAATTGTCATTGGAGCTGGTCCTGCTGGGCTAACTGCTGCTCGCCATTTGCAACGTCAGGGATTTCCTGTAACTGTGCTTGAGGCTAGGAATAGGATAGGAGGTCGTGTATTTACTGATCACTCATCACTTTCTGTCCCTGTAGATCTCGGTGCTAGCATTATAACTGGTGTTGAGGCTGATGTGGCCACTGAAAGAAGACCAGATCCTTCCTCACTGATTTGTGCTCAGTTGGGCCTTGAGTTGTCAGTGTTGAACAGTGATTGTCCTCTTTATGACATTGTGACAGGACAAAAGGTTCCTGCAGATATGGATGAAGCACTGGAAGCTGAATATAATAGTCTTATTGATGACATGGTATTGGTTGTTGCTCAGAAAGGTGAACAAGCAATGAGAATGTCTCTTGAAGATGGTTTAGAATATGCTCTTAAGATTCGTCGTATGGCACGCTCTGAAAGTAGTGAAGAAACTGGACAAAATAATACTGCAGATACTCCATTTGATTCCAAAAAGGACAGTACTGGGGAAAAAAAACTTGACGAGGAGATTTTGAGCCCTCAGGAGAGGAGAGTTATGGATTGGCACTTTGCTCATTTGGAGTATGGTTGTGCTGCTTCGCTTGAGGACGTTTCTCTTCCCTACTGGAACCAAGATGATGTGTATGGAGGTTTTGGGGGAGCTCATTGTATGATTAAAGGGGGCTACAGCTCTGTTGTTGAGTCTCTGGGAGAAGGACTTACAATTCACTTGAACCATGTTGTAACAAATGTGTCATATGGTATCAAGGAACCAGGTCAGAGTAATAAAGTTAAAGTTTCTACCTCAAATGGCAATGAGTTCTTTGGAGATGCTGTCCTTGTTACTGTTCCACTTGGCTGTTTGAAGGCTGAAACTGTACAATTCTCCCCACCTTTGCCACAGTGGAAATGTTCTTCTGTTCAGCGTCTTGGTTATGGAGTTCTAAATAAAGTGGTTTTGGAATTTCCTAGTGTATTTTGGGATGATGCTATGGACTACTTCGGAACAACAGCTGAGGAGAGAAGCAGTAGAGGTCACTGCTTTATGTTCTGGAATATCAGGAAAACAGTTGGGGCTCCGGTCCTTATAGCATTAGTGGTTGGTAAGACAGCCATAGACAGTCAAAACTTGAGTTCTTCTGATCATGTTAACCATGCATTGAAGGTTCTCCGTAAACTTTTTGGGGAGGATTCAGTTCCTGATCCTGTTGGCTATGTTGTGACTGATTGGGGTAGGGATCCTTTTAGCTATGGTGCTTATTCATACGTTGCTGTTGGAGCATCAGGAGAAGACTATGATATATTAGGGAGACCAGTTGATAACTGCTTGTTTTTTGCTGGTGAAGCAACCTGTAAAGAGCACCCAGACACTGTTGGTGGTGCAATGATGAGCGGACTACGAGAGGCTGTTCGCATAATTGACATATTGAGCACCGGAAATGATTATATTGCAGAGGTGGAGACATTGGAAGCTGCACAGGGGCAGTTAGACACTGAAAGGGATGAAGTTAGGGATATAATAAAGAGACTTGATGCAGTAGAGCTTTCTAACATAATGTATAAGAACTCCTTAGATGGTGCTCAAATTTTAACCCGGGAAGCTTTGTTAAGGGAAATGTTCTTTAATACAAAAACCACTGCTGGGCGCTTGCATGTGGCCAAACAATTGCTAAGTCTTCCCGTTGGAAACTTAAAGTCTTTTGCTGGAAGTAAAGAGGGGCTAGCCATTCTCAATTCATGGATACTGGATTCAATGGGGAAGGATGGTACCCAACTCTTGAGGCACTGTTTACGTCTTCTTGTTCGTGTTTCGACTGATCTTCTTGCTGTACGATTATCAGGAATGGGGAAAACGGTGAAGGAAAAAGTTTGTGTACACACTAGCCGGGATATTCGTGCTATAGCAAGCCAGTTGGTGAATGTATGGCTTGAAGTTTTCCGGAAGGAAAAAGCTTCTAATGGTGGATTGAAGTTATCAAGACAAACAGCTGCTGTGGATTTATCAAAGAGAAAATCAGTAAAAGATTCAGCCTCTGGAAAGCCACCTCTGAGCTCATACCATGGTACCATTGAGAATAAAGGTGGCTTGCTGAATCCTGCATCTGCTGGAAGCAATTCACCTTCCACTGCACATGTGAAGAAATTGCATAGTAAACAAGGAAGACACCAAACAGCTTATGACTCAAGGCATGAAGTCAGTTCTTCCAGGCCTAAAGGTTCAATAGACAAAGTAATTGCTGAGAAGGAGGAAAACCACTATGCTATATCTGAAGAAGAACAGGCTGCTATAGCTGCCGCAGAAGCTGCCCGTGCTAAAGCTCTTGCTGCTGCTGAGGCATATGCCTCTGCAGAGGCCAGATGCAATACACTGTTACAGCTTCCAAAGATACCCTCATTCCACAAATTTGCTAGACGTGAGCAGAATCCACAAAATGATGAGTGTGATAGTAAAAAAAGATGGTCTGGTGGTGTTTTTGGAAGGCAAGATTGTATTTCAGAGATTGATTCCAGGAATTGCAGAGTTAGGGACTGGTCTGTTGATTTCTCTGCTGCTTGTGTCAACCTTGATAATTCCAGAATGCCAGTTGATAACCTTTCACAGAGGAGTCACTCAAATGAGATTGCCAGCCATTTGAATTTCAGAGAGCACTCAGGAGAAAGTGCTGCTGGTGACAGCAGTATATACACAAAGGCTTGGATTGATACAGCTGGTGGTGTTGCAATTAAAGACCATCATGCCATAGAGAGATGGCAATCTCAAGCAGCTGCAGCCGATTCTTATTTTTCTAACCCAACTATTCATTTGAAGGACGAGGAGGATTCAAATGCCTGTTCAAAGCTGCCTAGCTGGAAGCGTGATGGTATTGCAAATGAGAGCTCTATTTCACAGGTTACTGTAAATAAGGAGTCCCTAAAAAGTCATCCCCGAGGAGCTGATCATATTAAACAAGCTGTTGTGGACTATGTTGCATCACTGCTGATGCCCCTTTATAAGGCGAGGAAACTAGACAAGGATGGATACAAAGCTATAATGAAGAAAAGTGCAACTAAGGTCATGGAGCAAGCCACAGATGCAGAAAAAGCCATGACTGTTTGCGAGTTTCTAGATTTTAAGCGAAAGAACAAGATTCGCTCCTTTGTGGATATATTGATCGAGAGACACATGACATCGAAACCAGATATGAAATCTTAA 5715 0.4212 MEGEDIRSGMKKKRSKKEIGFDSGDDEPIGSIFKVKRSRKKASCSSDAVRGKEDLEGMDDNDTLASFRKRLKGPKRDQGSGATRGASPAALPVSDEDLVALGPNGKDEKRVVSGDVDMQMRDSSDQHMEGSLSAIFHKAQSSSARKSRGGLKQKKVIQNVDSGMSPGCDGFVEAVDSVVESRSGSASGLKLVEGNVVSADALPQASEPAFTSVVDDQKCGDGVFQEETVKGDCESDVPDVCHGDRQQLSCVQVEDICCASDQKVALQESVLGESLDKLSSMSHDETVDTASLSKMGEEVKGFTEVRESENILTDELAQVCNIASERDDSTFVVHENVSTSAHTEPFISTENILNESNNMFSGKDFREFSSNGTLKLSGSHLEVDGGGKSESEFVNRNLCDFSSLDSKAEVQDFVLGFSPKRNDATFGGSLSSMVSNEANEAELAALSNHPEKPLEAFNIPKDSTASIQKCSSVLDPIQSDGSSLQSSIPDENGNSAEYHPSVPDFADNDCKLSSIPRVMRKAKMRKHGDMTYEGDADWEILINDHALNESQVMVDGDRTLRTRMKHESSLNTGEDFENVAVVAVSAGLKARKAGPIEKIKFKEILKRKGGLKEYLDCRNQILSLWSRDVTRILPLAECGVSDTHSEDGSPRSSLIKEVYAFLDQYGYINVGIASQKENVGISAKHCYKLVKEKGFEESSAASVADSEDGVSFIVGQTKMSHTSNEINNGLTKNFEDLTTEATEGMRYVNEAKMDLSDMTQQAERKKIDYQENDGIQDGIVNVTVDSSIPSSMFPDCRLTSLVATEKNNDSTTCIKSSLGGQAGEHLQSDLDPRKRVIVIGAGPAGLTAARHLQRQGFPVTVLEARNRIGGRVFTDHSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELSVLNSDCPLYDIVTGQKVPADMDEALEAEYNSLIDDMVLVVAQKGEQAMRMSLEDGLEYALKIRRMARSESSEETGQNNTADTPFDSKKDSTGEKKLDEEILSPQERRVMDWHFAHLEYGCAASLEDVSLPYWNQDDVYGGFGGAHCMIKGGYSSVVESLGEGLTIHLNHVVTNVSYGIKEPGQSNKVKVSTSNGNEFFGDAVLVTVPLGCLKAETVQFSPPLPQWKCSSVQRLGYGVLNKVVLEFPSVFWDDAMDYFGTTAEERSSRGHCFMFWNIRKTVGAPVLIALVVGKTAIDSQNLSSSDHVNHALKVLRKLFGEDSVPDPVGYVVTDWGRDPFSYGAYSYVAVGASGEDYDILGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILSTGNDYIAEVETLEAAQGQLDTERDEVRDIIKRLDAVELSNIMYKNSLDGAQILTREALLREMFFNTKTTAGRLHVAKQLLSLPVGNLKSFAGSKEGLAILNSWILDSMGKDGTQLLRHCLRLLVRVSTDLLAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKEKASNGGLKLSRQTAAVDLSKRKSVKDSASGKPPLSSYHGTIENKGGLLNPASAGSNSPSTAHVKKLHSKQGRHQTAYDSRHEVSSSRPKGSIDKVIAEKEENHYAISEEEQAAIAAAEAARAKALAAAEAYASAEARCNTLLQLPKIPSFHKFARREQNPQNDECDSKKRWSGGVFGRQDCISEIDSRNCRVRDWSVDFSAACVNLDNSRMPVDNLSQRSHSNEIASHLNFREHSGESAAGDSSIYTKAWIDTAGGVAIKDHHAIERWQSQAAAADSYFSNPTIHLKDEEDSNACSKLPSWKRDGIANESSISQVTVNKESLKSHPRGADHIKQAVVDYVASLLMPLYKARKLDKDGYKAIMKKSATKVMEQATDAEKAMTVCEFLDFKRKNKIRSFVDILIERHMTSKPDMKS 1904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00336 1904 MobiDBLite consensus disorder prediction 985 1018 - -
Cca05g00336 1904 Gene3D - 578 682 IPR036388 -
Cca05g00336 1904 Coils Coil 748 768 - -
Cca05g00336 1904 Pfam Flavin containing amine oxidoreductase 844 1314 IPR002937 GO:0016491
Cca05g00336 1904 SUPERFAMILY FAD/NAD(P)-binding domain 832 1316 IPR036188 -
Cca05g00336 1904 MobiDBLite consensus disorder prediction 1 77 - -
Cca05g00336 1904 MobiDBLite consensus disorder prediction 1508 1582 - -
Cca05g00336 1904 MobiDBLite consensus disorder prediction 1 110 - -
Cca05g00336 1904 PRINTS Adrenodoxin reductase family signature 835 857 - -
Cca05g00336 1904 PRINTS Adrenodoxin reductase family signature 858 871 - -
Cca05g00336 1904 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1412 1496 IPR035441 -
Cca05g00336 1904 MobiDBLite consensus disorder prediction 476 502 - -
Cca05g00336 1904 MobiDBLite consensus disorder prediction 1004 1018 - -
Cca05g00336 1904 MobiDBLite consensus disorder prediction 1561 1582 - -
Cca05g00336 1904 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 505 1900 - -
Cca05g00336 1904 Gene3D - 942 1269 - -
Cca05g00336 1904 Pfam SWIRM domain 592 669 IPR007526 GO:0005515
Cca05g00336 1904 Gene3D - 836 1312 IPR036188 -
Cca05g00336 1904 SUPERFAMILY FAD-linked reductases, C-terminal domain 1152 1263 - -
Cca05g00336 1904 MobiDBLite consensus disorder prediction 476 494 - -
Cca05g00336 1904 PANTHER FLAVIN MONOAMINE OXIDASE 505 1900 - -
Cca05g00336 1904 SUPERFAMILY Homeodomain-like 576 674 IPR009057 -
Cca05g00336 1904 Coils Coil 1330 1350 - -
Cca05g00336 1904 ProSiteProfiles SWIRM domain profile. 579 679 IPR007526 GO:0005515
Cca05g00336 1904 MobiDBLite consensus disorder prediction 1539 1554 - -
Cca05g00336 1904 MobiDBLite consensus disorder prediction 989 1003 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00336 Cca-Chr5 7202300 7217798 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Cca05g00336 Amino_oxidase 7.5e-108 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00336 05 7202300 7217798 Cca05g00336 05 7202300 7217798 ECH