Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00334 ATGAACACAATTCGGTCTCGTTTTCTGACGAGAATGGCCGAAGACATAGGAAAAACCAACCTCGAATCCTctgcttctgctgctgctgctgctgctTCGACAACCTCCAGGGGATTCTGGCCTTCCGTCTTACGTTGGATCCCCACTTCCACCGACCACATCATCAGCGCCGAGAAGCGGCTTCTCTCTCTTGTCAAGACTCCGTATGTTCAAGAACAGGTTAATATAGGTTCTGGTCCACCTGATTCCAGAGTTAGATGGTTCCGTTCATCCAGCAATGAACCGCGGTTTATTAACACTGTTACATTTGACAGTAAGGATGATTCTCCTACGCTTGTCATGGTTCATGGATACGCCGCGTCGCAGGGGTTCTTTTTTCGCAATTTTGATGCCCTTGCCTCACGCTTCAGAGTCATTGCTATTGATCAACTTGGTTGGGGTGGTTCTAGTAGGCCTGACTTTACATGCAGAAGCACTGAAGAAACTGAGTCGTGGTTTATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAACCTGAGCAATTTTATACTACTTGGGCATTCTTTTGGTGGTTATGTTGCTTCCAAGTACGCACTTAAGCACCCCGAGCATGTAAAACACTTGATTCTGGTGGGACCTGCTGGATTTTCATCAGAATCAGAAAGAATTACAAAGTTCTTATCAACGTGGAAAGGATCACTACTGAACCAGATTTGGGAATCTAATTTTACACCTCAAAAAATCATCAGAGGTTTAGGTCCTTGGGGTCCTGATATGGTCCGCAGGTATACAAGTGCCAGGTTTGTTACACACACAACAGGGGAAATGCTGTCAGAATCCGAATCTAGATTACTGACAGATTATGTTTACCATACTTTAGCAGCTAAAGCTAGTGGCGAGCTGTGCTTAAAATATATATTTTCATTTGGAGCACTCCCGAGGTCACCTCTTCTTCACAGTGCCTCAGAGTGGAAGGTGCCCACCACTTTCATATACGGCTTTCAGGACTGGATGAATTATGAAGGGGCCCAAAAAGCTCGTGAAGATATGAAGGTTCCATGTGAAATCCTTAGGGTTCCTCAGGCTGGGCACTTTGTGTTCATTGACAACCCAAGTGGCTTCCATTCAGCTGTGTTTTATGCTTGTCGAAGGTTTCTTAGGCCTGATCCAGACAGTGAATCCCTTCCTGAAGGGCTAACCTCGGCATAG 1209 0.4417 MNTIRSRFLTRMAEDIGKTNLESSASAAAAAASTTSRGFWPSVLRWIPTSTDHIISAEKRLLSLVKTPYVQEQVNIGSGPPDSRVRWFRSSSNEPRFINTVTFDSKDDSPTLVMVHGYAASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDFTCRSTEETESWFIDSFEEWRKAKNLSNFILLGHSFGGYVASKYALKHPEHVKHLILVGPAGFSSESERITKFLSTWKGSLLNQIWESNFTPQKIIRGLGPWGPDMVRRYTSARFVTHTTGEMLSESESRLLTDYVYHTLAAKASGELCLKYIFSFGALPRSPLLHSASEWKVPTTFIYGFQDWMNYEGAQKAREDMKVPCEILRVPQAGHFVFIDNPSGFHSAVFYACRRFLRPDPDSESLPEGLTSA 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00334 402 PRINTS Alpha/beta hydrolase fold signature 135 150 IPR000073 -
Cca05g00334 402 PRINTS Alpha/beta hydrolase fold signature 184 197 IPR000073 -
Cca05g00334 402 PRINTS Alpha/beta hydrolase fold signature 198 211 IPR000073 -
Cca05g00334 402 SUPERFAMILY alpha/beta-Hydrolases 99 378 IPR029058 -
Cca05g00334 402 Pfam alpha/beta hydrolase fold 110 371 IPR000073 -
Cca05g00334 402 Gene3D alpha/beta hydrolase 96 384 IPR029058 -
Cca05g00334 402 PRINTS Epoxide hydrolase signature 135 150 IPR000639 GO:0003824
Cca05g00334 402 PRINTS Epoxide hydrolase signature 184 197 IPR000639 GO:0003824
Cca05g00334 402 PRINTS Epoxide hydrolase signature 198 211 IPR000639 GO:0003824
Cca05g00334 402 PRINTS Epoxide hydrolase signature 326 342 IPR000639 GO:0003824
Cca05g00334 402 PRINTS Epoxide hydrolase signature 359 381 IPR000639 GO:0003824
Cca05g00334 402 PANTHER RE40534P-RELATED 10 389 - -
Cca05g00334 402 PANTHER BNAA01G13630D PROTEIN 10 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00334 Cca-Chr5 7191328 7195727 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00334 05 7191328 7195727 Cca05g00334 05 7191328 7195727 ECH
Cca05g00334 05 7191328 7195727 Cca07g00301 07 3981877 3999365 PCT