Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00331 ATGAGCACTGGCCAACCCCCACGCTTCCTTTATTCTCTTCCTCCTTCCTCTCAACCTTCACTTCCTCATCACACTCTCCCAATGAAGATCCAGTGCGACGTCTGCAACAAAAACGAAGCTTCCCTCTTCTGCACCGCCGACGAAGCCGCCCTCTGCGACGCCTGCGACCACCGCGTCCACCATGCCAACAAACTCGCCTCCAAACACCAACGCTTCTCCCTTCTCCGCCCCTCCCCCAGCCAACACCCTGTGTGCGATATTTGCCAGGAGAAAAGAGCTTTCACGTTCTGCCAGCAAGACAGGGCGATTCTCTGCAAAGACTGTGACGTGTCCATTCACTCTGCCAACGAACACACCCTTAAGCACGATAGGTTTCTTCTCACTGCTGTTAAGCTTTCTGCTTCTGCTATGCTTAGCTCATCGGAAGCTTCATCTGATTCAAACTCAACCCCTTCTTCTCTTCCTCTTTCTTCTGACGTTTCACGTCAAACAACACTACCTCCATCTTCCACCGTCAACAAGGTCGCTGCTATTGTAGGAACTGCTTCCACAGACGCTATCAGTAGCAGCATATCGGACTACTTGATAGAAACTCTCCCTGGCTGGCAAGTTGAGGACTTTCTAGATTCGTATTCTGTTCCCTTTGGTTTCTCTAAGAGTGATGAAGTGATGACACGGTTTGATGGTGACGTGGAGGGGCATGTGGGTTCGTTATCGACTGAGAGCATGGGGATCTGGGTTCCTCAAGCGCCGCCACCTCTTATGTGTTCCTCGCAGATGGATCGAGTGATTATTGGTCACGCTGAGACCAACAACGTCAAAGGTAGCAGATCGAGGTTGAAGGATGATAATTTCACTGTTCCACAGATTAGTCCTCAATCCAATTCCAAGAGAGCCAGATTTCTATGGTAG 912 0.5033 MSTGQPPRFLYSLPPSSQPSLPHHTLPMKIQCDVCNKNEASLFCTADEAALCDACDHRVHHANKLASKHQRFSLLRPSPSQHPVCDICQEKRAFTFCQQDRAILCKDCDVSIHSANEHTLKHDRFLLTAVKLSASAMLSSSEASSDSNSTPSSLPLSSDVSRQTTLPPSSTVNKVAAIVGTASTDAISSSISDYLIETLPGWQVEDFLDSYSVPFGFSKSDEVMTRFDGDVEGHVGSLSTESMGIWVPQAPPPLMCSSQMDRVIIGHAETNNVKGSRSRLKDDNFTVPQISPQSNSKRARFLW 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00331 303 PANTHER B-BOX ZINC FINGER PROTEIN 19 28 300 - -
Cca05g00331 303 SMART bboxneu5 27 74 IPR000315 GO:0008270
Cca05g00331 303 SMART bboxneu5 80 127 IPR000315 GO:0008270
Cca05g00331 303 MobiDBLite consensus disorder prediction 274 303 - -
Cca05g00331 303 ProSiteProfiles Zinc finger B-box type profile. 27 74 IPR000315 GO:0008270
Cca05g00331 303 MobiDBLite consensus disorder prediction 141 168 - -
Cca05g00331 303 ProSiteProfiles Zinc finger B-box type profile. 80 127 IPR000315 GO:0008270
Cca05g00331 303 PANTHER B-BOX ZINC FINGER PROTEIN 22 28 300 - -
Cca05g00331 303 CDD Bbox1_BBX-like 32 74 - -
Cca05g00331 303 Pfam B-box zinc finger 30 71 IPR000315 GO:0008270
Cca05g00331 303 Pfam B-box zinc finger 81 120 IPR000315 GO:0008270
Cca05g00331 303 CDD Bbox1_BBX-like 84 127 - -
Cca05g00331 303 MobiDBLite consensus disorder prediction 282 303 - -
Cca05g00331 303 Gene3D Classic Zinc Finger 28 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00331 Cca-Chr5 7134159 7135833 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Cca05g00331 zf-B_box 2.8e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00331 05 7134159 7135833 Cca05g00331 05 7134159 7135833 ECH
Cca05g00331 05 7134159 7135833 Cca07g00307 07 4060472 4062151 PCT