Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00329 ATGGCTGGGTTCTTCTCTCTAGgaggaaggcagaacaaggcggaagaagaagaggaacaaagagaagaCAACGTGAACGCCGCTGGTAACAGTAACAGTCAATTTTTGTTCAGAAACGAGGAGATCTACAACAAGGGATTCGAGATATGGCCACAGCCACAATCCTCGTACCACCACAACTTGACCAACTACTACTCCTTCGGTGTGGGACCTAGTCGCAGGaacagcaccaccaacaacaacaacGATACCTCCTCCAACGTAAACGACGACGTTTCCGTCTCTTTCTCGGATGAGTCGAACCGGTTCGGGTTCACCGTGATGAGGTCCGGCGGCGTGGGTGGCGGCATGAACTGTCAGGACTGCGGGAACCAAGCCAAGAAAGACTGCGCTCACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGCCAAACGCACGTTAAGAGCACTTGGGTTCCCGCTGCCAAACGCCGCGAACGACAGCAACAACTCGCCTCGTTGCAGCACCAACAAAATCAACCGCCGCAGTTTCGCGGCGGAGACCACTCCAAACGACACAGAGACAACATCGAAGGCGCTGCTTCTCTCGCTTGCGCCCCAGTTCCTATCACCACCACAGGGTTGGAGCTGGGGCAGTTTCCACCGGAGCTAAACTCTCCGGCGGTGTTCCGGTGTGTGAAGGTGAGTGCAATGGACGCAGCGGACGAGCGTTACGCGTATCAAACGGCGGTGAACATAGGAGGACACGTGTTCAAGGGAATTCTCTACGATCAAGGAGTGGAGGGTCCTTATAGTGCAGGTTGCGAGGGTTCCTCCGGTGGTGGCGGCGGCGAACCTCAGCCGCTAAGTCTCATAGCCGCCACAGCCACCGCCACCACAAGCGGAAACCCTTTCGATCCTTCGCTCTACACGGCTCCGCTCAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCGAGATCTTAA 978 0.5225 MAGFFSLGGRQNKAEEEEEQREDNVNAAGNSNSQFLFRNEEIYNKGFEIWPQPQSSYHHNLTNYYSFGVGPSRRNSTTNNNNDTSSNVNDDVSVSFSDESNRFGFTVMRSGGVGGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLASLQHQQNQPPQFRGGDHSKRHRDNIEGAASLACAPVPITTTGLELGQFPPELNSPAVFRCVKVSAMDAADERYAYQTAVNIGGHVFKGILYDQGVEGPYSAGCEGSSGGGGGEPQPLSLIAATATATTSGNPFDPSLYTAPLNAFMAGTQFFPPPRS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00329 325 MobiDBLite consensus disorder prediction 72 93 - -
Cca05g00329 325 MobiDBLite consensus disorder prediction 167 181 - -
Cca05g00329 325 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 323 IPR007818 GO:0003700|GO:0006355
Cca05g00329 325 MobiDBLite consensus disorder prediction 1 31 - -
Cca05g00329 325 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 215 263 IPR006511 -
Cca05g00329 325 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 323 - -
Cca05g00329 325 Pfam Domain of unknown function (DUF702) 116 264 - -
Cca05g00329 325 MobiDBLite consensus disorder prediction 160 189 - -
Cca05g00329 325 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 118 160 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00329 Cca-Chr5 7007788 7009757 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Cca05g00329 DUF702 3e-65 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00329 05 7007788 7009757 Cca04g00393 04 3969085 3970472 ECH
Cca05g00329 05 7007788 7009757 Cca07g00102 07 1359197 1360104 ECH
Cca05g00329 05 7007788 7009757 Cca05g00329 05 7007788 7009757 ECH
Cca05g00329 05 7007788 7009757 Cca07g00311 07 4131931 4134331 PCT