Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00328 ATGCCTCGCTACTCCTTCCTCGCTCTCCTTCTCCTcgccgccgtggcagccgccgaggcccccgacgccgacgAAATTCTGATCCGTCAGGTGGTGCCGGACGCCGAGGCCGAGGAGGATCACGTGCTGAACGCGGAGCATCGCTTCTCCACCTTCAAGGCCAAGTTCGGGAAGAGCTACGCGACGAAGGAGGAGCACGACCATCGCTTCGGCGTCTTCAAGTCGAACCTTCGCAGAGCGAGGCTTCACGCGAAACTCGACCCCTCCGCCGTCCACGGCGTCACGAAATTCTCCGATCTTACTCCGGCGGAGTTCCGGCGGCAGTTCCTCGGCCTCAAGCCTCTCCGCTTCCCGCCGCATGCTCAGAAGGCGCCTATCCTCCCTACCAAGGATCTCCCCAAGGATTTCGATTGGCGTGACAAAGGTGCCGTCACCAAAGTCAAGGACCAGGGTTCGTGTGGTTCGTGTTGGTCTTTCAGTACTACGGGAGCGTTGGAAGGTGCTCATTATCTTGCCACTGGCGAGCTCGTTAGTCTTAGCGAGCAACAGCTTATGGACTGTGATCACGTGTGTGATCCAGAACAATATGGAGAGTGTGACGCAGGCTGCGGTGGTGGGTTGATGAACAACGCATTTGAGTACATACTTGAGTCTGGTGGAATACAGCGAGAAGAAGACTATCCATACACCGCAAGAGATGGCACCTGCAGATTTGACAAAAGCAAAATTGCGGCTACTGTATCTAATTACAGTGTGGTTTCCCTTGATGAAGATCAAATTGCTGCAAACCTAGTGAAGAATGGCCCTCTTGCAGTTGGTATCAATGCACTTTATATGCAGACATATATAGGTGGCGTTTCATGCCCATACGTCTGCGGGAAGCATTTGGATCATGGGGTTCTTCTAGTGGGTTATGGCGAAGGTGCATATGCTCCCATTCGTTTCAAGAAAAAGCCTTACTGGATCATTAAGAATTCATGGGGTGAGAACTGGGGAGTGAAAGGATATTACAAGATCTGCAGAGGCCAAAATGTATGTGGAGTGGATTCCATGGTCTCAACTGTAGCAGCTATACATTCATAA 1083 0.4968 MPRYSFLALLLLAAVAAAEAPDADEILIRQVVPDAEAEEDHVLNAEHRFSTFKAKFGKSYATKEEHDHRFGVFKSNLRRARLHAKLDPSAVHGVTKFSDLTPAEFRRQFLGLKPLRFPPHAQKAPILPTKDLPKDFDWRDKGAVTKVKDQGSCGSCWSFSTTGALEGAHYLATGELVSLSEQQLMDCDHVCDPEQYGECDAGCGGGLMNNAFEYILESGGIQREEDYPYTARDGTCRFDKSKIAATVSNYSVVSLDEDQIAANLVKNGPLAVGINALYMQTYIGGVSCPYVCGKHLDHGVLLVGYGEGAYAPIRFKKKPYWIIKNSWGENWGVKGYYKICRGQNVCGVDSMVSTVAAIHS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00328 360 PANTHER CYSTEINE PROTEASE RD19C-RELATED 24 356 - -
Cca05g00328 360 SUPERFAMILY Cysteine proteinases 46 355 IPR038765 -
Cca05g00328 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 320 339 IPR025661 -
Cca05g00328 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
Cca05g00328 360 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508|GO:0008234
Cca05g00328 360 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Cca05g00328 360 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508|GO:0008234
Cca05g00328 360 SMART Inhibitor_I29_2 49 105 IPR013201 -
Cca05g00328 360 Pfam Papain family cysteine protease 132 354 IPR000668 GO:0006508|GO:0008234
Cca05g00328 360 Pfam Cathepsin propeptide inhibitor domain (I29) 49 105 IPR013201 -
Cca05g00328 360 Gene3D Cysteine proteinases 21 356 - -
Cca05g00328 360 SMART pept_c1 132 356 IPR000668 GO:0006508|GO:0008234
Cca05g00328 360 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 356 - -
Cca05g00328 360 CDD Peptidase_C1A 133 355 IPR039417 -
Cca05g00328 360 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00328 Cca-Chr5 6952235 6955658 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00328 05 6952235 6955658 Cca05g00328 05 6952235 6955658 ECH
Cca05g00328 05 6952235 6955658 Cca07g00171 07 2166541 2168255 PCT