Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00323 ATGCCAAGTAGCAACTCTACTCCACTAAAGGCCACGTCTCAAAGTACTCGTAATTACTATATATTTACATTCACACACCAGTTTTACCATTATAAATACCCCCATCACCCCCATTCCTATTTCCTAAACCAAACCAAAGACCTCTCTCCCTTGGAAACTTTGTCCAGTGTTAAGAAACCAGACATGGGAAATGATGATGATAAGAAGAAGCCTGTGAAAAAACCAGCACAGGCTAGCTCCAGAAAGGGTTGCATGAGGGGTAAGGGAGGTCCTGAGAATGCTGCTTGCACCTACAAGGGTGTGAGGCAGAGAACTTGGGGGAAATGGGTCGCTGAGATCCGTGAACCAAACCGTGGTGCACGCCTCTGGCTTGGCACATTTGAAACCTCTCGTGATGCTGCCTTGGCCTATGATGCTGCTGCCAAAAAACTCTATGGATCTGATGCAAAGCTGAACCTTCCAGAGGTTCATCAGCCTCCAAACTCAAACCCTCCTCCAAGCCCTCCAACTCCCCAAATGTCACCACAGCCTCAAATTCACAACACCACCTTTGATGTTGTTCCTGATGTCAACCCTTCTGATTTCACCAACAACATGGTCAACAGCAACAACCCTGTGCTCTCCATGGCCTCTCACCAGGTTGGTGATGTGCCAGTCTATACCAGTGACTCAATTGTGTCCCTTCCTTTTGAAACCACCCACAACAATGTCACCCTTCCATATGAAACCATCAACGACCATGTCTCTCTTCCATATGGAACCAACACCCACACTGTCCCCCTTCCATATGGAACCAACACCAACCATGTCAGCCTTCCATATGGAACCGACCCCAACCATGTCTCTCTTCCGTTTGGAACCCCCAACAACCATGTCTCCTTTCCATATGAAACCAACAATGTCTCCTTTCCATATGAAACCAACAATGTCTCCTTTCCATATGACTTCAACAGCAATGTCTCTCTCCCATTTGGAACCAACTTCACTGTTCCGCAAATGGAGAATTTCTCCTTCTACAGCAACTCTTTCTGGGGGATGATGAACGAGACTGTTCCTATGCTTGATGAATCCATTTGGACTGATGATGCTATGACCCTTGATTTTCCTTTTGTTGCAGATGATGAAATCTTTGGAACTGGAAATTTCCCTGATGTGGGTGGATGGAACTATGGCGAAGACGACAACGTCGACGACAACAGCCCTCCTCCTCCTTGGATGTAA 1221 0.4676 MPSSNSTPLKATSQSTRNYYIFTFTHQFYHYKYPHHPHSYFLNQTKDLSPLETLSSVKKPDMGNDDDKKKPVKKPAQASSRKGCMRGKGGPENAACTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSRDAALAYDAAAKKLYGSDAKLNLPEVHQPPNSNPPPSPPTPQMSPQPQIHNTTFDVVPDVNPSDFTNNMVNSNNPVLSMASHQVGDVPVYTSDSIVSLPFETTHNNVTLPYETINDHVSLPYGTNTHTVPLPYGTNTNHVSLPYGTDPNHVSLPFGTPNNHVSFPYETNNVSFPYETNNVSFPYDFNSNVSLPFGTNFTVPQMENFSFYSNSFWGMMNETVPMLDESIWTDDAMTLDFPFVADDEIFGTGNFPDVGGWNYGEDDNVDDNSPPPPWM 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00323 406 MobiDBLite consensus disorder prediction 158 175 - -
Cca05g00323 406 MobiDBLite consensus disorder prediction 152 183 - -
Cca05g00323 406 MobiDBLite consensus disorder prediction 55 90 - -
Cca05g00323 406 CDD AP2 96 156 IPR001471 GO:0003700|GO:0006355
Cca05g00323 406 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Cca05g00323 406 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Cca05g00323 406 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Cca05g00323 406 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 305 377 - -
Cca05g00323 406 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 73 191 - -
Cca05g00323 406 Pfam AP2 domain 97 146 IPR001471 GO:0003700|GO:0006355
Cca05g00323 406 Gene3D AP2/ERF domain 97 155 IPR036955 GO:0003700|GO:0006355
Cca05g00323 406 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Cca05g00323 406 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 305 377 - -
Cca05g00323 406 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 73 191 - -
Cca05g00323 406 MobiDBLite consensus disorder prediction 59 74 - -
Cca05g00323 406 SUPERFAMILY DNA-binding domain 97 154 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00323 Cca-Chr5 6783949 6785703 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca05g00323 AP2 2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00323 05 6783949 6785703 Cca05g00323 05 6783949 6785703 ECH
Cca05g00323 05 6783949 6785703 Cca07g00323 07 4322356 4323774 PCT