Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00322 ATGGTGTCTCTATTCTCGCCACCACCTTCATCCTCCAACATTCAATCACGCCAAACTCGCTTCTTCTCCACTCTCTTCCTTCCACCACGGAGCGTCCGATTCCAATGCGACTGCGAGAAAAATTACAAACGGAAAACGGTACGGTGCGGCGTTACGAGCGCGAGCGCGCCCCCGCCGCCGTCAACGTCGTTGGCGAAGGAGCCTCACAAATTCTTCGACCACGTAGTCATCACCGTTCGCGGCGGCGACGGCGGCCATGGCGCGGTGCTGAACGATAGAGTGAAGCAGGAGCAGGGAAAGGCGAAGAAGAAAGGGAAAGGCTCTCTGAAGAGAGACTTCGACGGCTCACTGATACTCCCCATGGGAGGCCACGGCGGTGACGTGGTGGTCTACGCCGACGAGGCGAAGGATACGTTGCTTGAGTTTCACAACAAGAGCCGGTATCACGCCAAACGCGGTGGCAACGTGGATGCCATGGGCGCTTTGACGTCCTCGTTGCGCAATGGACTTGCCGCACCGACTCTGCGCATTCCAGTTCCTGTAGGCACTGTTGTGAAAAGCAAACGAGGGAAGATGTTAGCTGATCTAGCACAACCTGGTGATGAAGTTCTTGTTGCGAGGGGAGGACAAGGAGGGATTAGCTTGTTAGAAATGCCACAGCATAAAAGAAAAAAGATGATGGCTTTGACAACTAATGTGATGAGAGATGACTCAGACAAGGTTTTAGTCCATGGCCAACCTGGCGAGGAAGTCAAGTTGGAGTTGATCCTACGAGTTGTTGCTGATGTTGGTCTGGTTGGACTTCCAAATGCTGGGAAATCCACACTTCTGGCAGCCATTACACTTGCAAAACCTGATATTGCTGATTATCCTTTTACAACATTAATGCCAAATCTTGGACGCCTTGGTGGTGATCCCAGCTTAGGGGCAGAAATGTATTCGTCAGAAGCTACATTGGCAGATTTGCCCGGTCTTATAGAAGGTGCTCACTTAGGAAAGGGTCTTGGTCGCAATTTCCTGAGGCACCTCAGGAGAACCCAGCTACTGGTCCATGTTGTTGATGCTGCCGCTGAGAATCCTATAAGTGACTATAGAACTGTCAGAGAAGAGTTGCGCATGTATAATCCTGAGTACCTTGAACGACCGTATGTTGTAATTTTGAATAAGATTGACCTACCAGAGGCAAAGGACAGACTTTCATCATTGACTCAAGAAATTATGAAAATTGGCAATGATGGTGCTGCTTCGGAATCAAAACCAATTTCTGAAGTTCCAGCTCAATTGTCTGATGAAACTGACGTGAAGGAAAAAAGACTTGAGGACTATCCACGACCTCTCTCTGTTGTTGGAGTTAGTGTTCTAAAAGGTATAAGGATAAACGAGATGTTAAAGGAGATAAGATCAGCTTTAAGGAAGTGTTCAGATTCCAATAAAACATTGGCTTCAAGGGTTTCACCTTGA 1461 0.486 MVSLFSPPPSSSNIQSRQTRFFSTLFLPPRSVRFQCDCEKNYKRKTVRCGVTSASAPPPPSTSLAKEPHKFFDHVVITVRGGDGGHGAVLNDRVKQEQGKAKKKGKGSLKRDFDGSLILPMGGHGGDVVVYADEAKDTLLEFHNKSRYHAKRGGNVDAMGALTSSLRNGLAAPTLRIPVPVGTVVKSKRGKMLADLAQPGDEVLVARGGQGGISLLEMPQHKRKKMMALTTNVMRDDSDKVLVHGQPGEEVKLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLGGDPSLGAEMYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTQLLVHVVDAAAENPISDYRTVREELRMYNPEYLERPYVVILNKIDLPEAKDRLSSLTQEIMKIGNDGAASESKPISEVPAQLSDETDVKEKRLEDYPRPLSVVGVSVLKGIRINEMLKEIRSALRKCSDSNKTLASRVSP 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00322 486 PRINTS GTP1/OBG GTP-binding protein family signature 263 283 IPR006073 GO:0005525
Cca05g00322 486 PRINTS GTP1/OBG GTP-binding protein family signature 284 302 IPR006073 GO:0005525
Cca05g00322 486 PRINTS GTP1/OBG GTP-binding protein family signature 319 334 IPR006073 GO:0005525
Cca05g00322 486 PRINTS GTP1/OBG GTP-binding protein family signature 336 354 IPR006073 GO:0005525
Cca05g00322 486 ProSiteProfiles Obg domain profile. 69 260 IPR006169 -
Cca05g00322 486 SUPERFAMILY Obg GTP-binding protein N-terminal domain 70 226 IPR036726 -
Cca05g00322 486 CDD Obg 261 399 IPR031167 GO:0005525
Cca05g00322 486 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 40 479 - -
Cca05g00322 486 ProSitePatterns GTP1/OBG family signature. 321 334 IPR006074 GO:0005525
Cca05g00322 486 MobiDBLite consensus disorder prediction 413 432 - -
Cca05g00322 486 Pfam GTP1/OBG 73 258 IPR006169 -
Cca05g00322 486 Pfam 50S ribosome-binding GTPase 262 389 IPR006073 GO:0005525
Cca05g00322 486 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 40 479 IPR045086 GO:0003924|GO:0005525
Cca05g00322 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 471 IPR027417 -
Cca05g00322 486 TIGRFAM small_GTP: small GTP-binding protein domain 262 406 IPR005225 GO:0005525
Cca05g00322 486 Gene3D GTP1/OBG domain 70 259 IPR036726 -
Cca05g00322 486 Gene3D - 260 480 IPR027417 -
Cca05g00322 486 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 261 471 IPR031167 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00322 Cca-Chr5 6775963 6781486 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00322 05 6775963 6781486 Cca05g00322 05 6775963 6781486 ECH