Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00321 ATGGCGGAAGAGGGACAGGTTATCGGCATCCACACGGTGGAGACGTGGAACGAGAAGCTGCAGGAGGGAAAAGATTCCCAGAAACTGGTTGTGGTGGATTTTACTGCTTCCTGGTGTGGTCCATGCCGTTTTATTGCTCCAATTCTGGCAGAAATGGCTAAGCGTATACCTCAAGTGATTTTCCTCAAGGTGGATGTGGATGAACTGAGGTCTGTTGCTGAGGAATGGTCCATTGAGGCTATGCCAACCTTCCTCTTTTTGAAAGATGGGAAGCTGGTGGACAAGGTTGTGGGTGCTAGTAAGGACCTGCTGCAAGTGACCATAGACAAGCATGCTTCTGTTGCTGCTGCTTGA 354 0.4972 MAEEGQVIGIHTVETWNEKLQEGKDSQKLVVVDFTASWCGPCRFIAPILAEMAKRIPQVIFLKVDVDELRSVAEEWSIEAMPTFLFLKDGKLVDKVVGASKDLLQVTIDKHASVAAA 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00321 117 Pfam Thioredoxin 10 109 IPR013766 -
Cca05g00321 117 Gene3D Glutaredoxin 1 116 - -
Cca05g00321 117 PANTHER THIOREDOXIN 1 113 - -
Cca05g00321 117 PANTHER THIOREDOXIN 1 113 - -
Cca05g00321 117 SUPERFAMILY Thioredoxin-like 4 111 IPR036249 -
Cca05g00321 117 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Cca05g00321 117 PRINTS Thioredoxin family signature 30 38 - -
Cca05g00321 117 PRINTS Thioredoxin family signature 38 47 - -
Cca05g00321 117 PRINTS Thioredoxin family signature 77 88 - -
Cca05g00321 117 CDD TRX_family 14 101 - -
Cca05g00321 117 ProSiteProfiles Thioredoxin domain profile. 1 113 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00321 Cca-Chr5 6759346 6761015 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00321 05 6759346 6761015 Cca05g00321 05 6759346 6761015 ECH
Cca05g00321 05 6759346 6761015 Cca07g00327 07 4352773 4354710 PCT