Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00319 ATGGAAACCAACTCAGTTTCCAAGCTTCTGGTACTTGTCTTCACTGTTCTGTTTGTAGGTTCTGAGTTGATCCATTGCAGTGTCACCTATGATAGGAAAGCCATTATCATCAATGGCCAAAGGAGAATCCTCATCTCTGGCTCCATTCACTACCCCAGAAGCACCCCTGAAATGTGGGAGGATCTAATTAGGAAGGCGAAAGATGGAGGCCTTGATGTTATCGACACTTATGTGTTCTGGAATGTTCATGAACCATCTCCTGGCAATTACAATTTTCAAGGGAGGTACGATCTGGTACGGTTCATTAAGACAGTGCAAAGGGTTGGGCTCTATGTCCACCTTCGCATTGGACCTTATGTATGCGCTGAGTGGAACTTTGGAGGGTTTCCTGTTTGGTTGAAGTATGTTCCTGGCATCAGCTTCAGAACAGATAATGGTCCTTTCAAGGCTGCAATGCAAAGTTTCACTCAGAAAATAGTTCAGATGATGAAGAACGAAAAGCTATTTCAGTCTCAGGGTGGTCCAATCATTCTTTCTCAGATTGAGAATGAGTATGGACCTGAAAGCAGGGCACTGGGAGGTGCTGGTCATGCATACACAAACTGGGCTGCAAAGATGGCTGTTGGATTGGGTACTGGTGTCCCCTGGGTAATGTGCAAGCAAGATGATGCCCCAGATCCAGTGATAAATGCATGCAATGGTTTTTATTGTGATGACTTCTCTCCAAATAAACCATACAAACCTAGCCTTTGGACTGAGTCTTGGAGTGGTTGGTTCACAGAATTTGGTGGTCCAATTTACCAACGACCAGTTCAGGATCTAGCATTTGGGATTGCCCGTTTCATACAAAAGGGTGGCTCATTTTTCAATTACTACATGTACCATGGAGGAACTAATTTTGGACGATCAGCTGGAGGGCCATTCGTTACTACAAGCTATGACTATGATGCTCCAATTGATGAATATGGTTTGATCAGGGAACCTAAATATGGTCATTTGAAGGACCTTCATAAAGCTATTAAGCAATGTGAACGGGCTTTGGTTTCTTCAGATCCCACTGTCACATCATTAGGAACGTATGAGCAGGCTCATGTGTTCTCTTCAAGAAATGGAGCATGTGCAGCTTTTCTTGCAAACTACAATTCAAATTCTGCAGCAAAAGTGATGTTCAATAATAGGAAATATAACTTGCCTCCTTGGTCCATAAGCATCCTCCCTGATTGTAGAACAGATGTATTTAACACTGCAAGAGTAAGGTTTCAAACTTCACTAATACAAATGGTGCCTAGCAATTCCAAGTTGTTCTCATGGGAGACCTATGATGAAGATGTATCTTCACTAGCAGAAAGTTCCAAGATTACAGCTTCTGGACTATTAGAACAGATCAATGCTACCAGGGACACCAGTGACTATCTATGGTATATAACCAGTGTTGACATTAGTTCATCAGAATCATTTCTTAGAGGAGGGCGCAAGCCTAGCATTAGTGTTCATTCTGCAGGCCATGCTGTCCATGTGTTTATTAACGGTCAATTTTCAGGCTCCTCTTTTGGGACAAGGGAAGACAGAAGTTGCACATTTGATGGCCCTGTTAACCTACGTGCTGGAACTAATAAAATAGCACTTCTTAGTGTAGCTGTTGGATTACCTAATGTTGGATTCCATTTTGAAACATGGAAAGCTGGGATCACTGGAGTTTTGCTTCATGGTCTTGACCACGGACAGAAGGATTTGACTTGGCAGAAATGGTCATACCAGATTGGTCTAAAAGGAGAGGGTATGAATTTGGTGTCTCCCAATGGGGTCACATCTGTTGACTGGGTCACAAATTCACTAGCTGCCAGGAGCCCGTCTCAGTTGAAATGGCACAAGGCTTATTTCAATGCACCTGATGGAAATGAAGTATTGGCCTTGGACCTGAGCAGTATGGGAAAGGGTCAAGCATGGATCAATGGACAAAGCATAGGAAGGTATTGGATGAATTATGCAAAGGGTTCCTGTAATTCTTGCAACTATGCTGGGACATTCCGGCCTGCAAAATGCCAACTGGGTTGTGGACAACCTACCCAACGATGGTATCACGTGCCAAGATCATGGTTAAAGCCAACAAAGAACTTGATAGTAGTATTCGAGGAATTGGGTGGGAATCCTTGGAAAATAGCTTTGGTAAAAAGGACAATACATACTCCAACAACTAGTGAACCCGATTCAAAGAATTGA 2220 0.4306 METNSVSKLLVLVFTVLFVGSELIHCSVTYDRKAIIINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNVHEPSPGNYNFQGRYDLVRFIKTVQRVGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKAAMQSFTQKIVQMMKNEKLFQSQGGPIILSQIENEYGPESRALGGAGHAYTNWAAKMAVGLGTGVPWVMCKQDDAPDPVINACNGFYCDDFSPNKPYKPSLWTESWSGWFTEFGGPIYQRPVQDLAFGIARFIQKGGSFFNYYMYHGGTNFGRSAGGPFVTTSYDYDAPIDEYGLIREPKYGHLKDLHKAIKQCERALVSSDPTVTSLGTYEQAHVFSSRNGACAAFLANYNSNSAAKVMFNNRKYNLPPWSISILPDCRTDVFNTARVRFQTSLIQMVPSNSKLFSWETYDEDVSSLAESSKITASGLLEQINATRDTSDYLWYITSVDISSSESFLRGGRKPSISVHSAGHAVHVFINGQFSGSSFGTREDRSCTFDGPVNLRAGTNKIALLSVAVGLPNVGFHFETWKAGITGVLLHGLDHGQKDLTWQKWSYQIGLKGEGMNLVSPNGVTSVDWVTNSLAARSPSQLKWHKAYFNAPDGNEVLALDLSSMGKGQAWINGQSIGRYWMNYAKGSCNSCNYAGTFRPAKCQLGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKIALVKRTIHTPTTSEPDSKN 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00319 739 PANTHER BETA-GALACTOSIDASE RELATED 3 732 IPR001944 GO:0004553|GO:0005975
Cca05g00319 739 SUPERFAMILY (Trans)glycosidases 27 344 IPR017853 -
Cca05g00319 739 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Cca05g00319 739 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Cca05g00319 739 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Cca05g00319 739 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Cca05g00319 739 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Cca05g00319 739 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Cca05g00319 739 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Cca05g00319 739 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Cca05g00319 739 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Cca05g00319 739 Gene3D Glycosidases 24 344 - -
Cca05g00319 739 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Cca05g00319 739 PANTHER BETA-GALACTOSIDASE 3 732 - -
Cca05g00319 739 SUPERFAMILY Galactose-binding domain-like 581 727 IPR008979 -
Cca05g00319 739 SUPERFAMILY Galactose-binding domain-like 402 565 IPR008979 -
Cca05g00319 739 Gene3D - 602 731 - -
Cca05g00319 739 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Cca05g00319 739 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00319 Cca-Chr5 6718878 6724593 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00319 05 6718878 6724593 Cca06g01301 06 27750691 27756572 ECH
Cca05g00319 05 6718878 6724593 Cca05g00319 05 6718878 6724593 ECH
Cca05g00319 05 6718878 6724593 Cca07g00328 07 4361019 4366264 PCT