Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00318 ATGTATCCGAACCAAGCCTTTTCTTCAGGGTCCTATGCAGAGATGTTGTCTGGGAATCCTCTTTTACCTCATAACTATAGTGAATCTGTGGGAGGACAAAATGAGCTGAAGTTCATCACATCCATGGCTGACACAGTGACTATGCAGCCTATTGATGGACATTCCAATGCTGGTGATCCAGCGTGCAACTCTTTCGCCAATGCTGGAGATTCCCATTCCCATGTTATTCCAAGGACAACACAATTGGGACTTGTGGAAAGTGAGCAAAATGTGCAGAACCAAGGCTTGTCTCTTAGCCTCGGCTCAGTGATGCCTTCTATGCAATCTGTCCCTAACTTTTCATATCAGTATCCCAGCACCGGATTCTCCTCGCTAATGACTGCTTCTGTCCCAAATTTGAAGGGTACTTCTTCAAAAGATGATGAGGCCAGCCTACAGAGGGAATTTAGGACTGCTGAGTGCATGGCTTCTTTAGCTTCTGGTGGTGGCTTTCACAAAAGGGAGGGTTTGTATAGTCCACACCCCTCAATGTGCCTCAGTGAAGGCCAGTCTGATGGATCACAGGGTTTTTCCAACACTGTCTTGAACTCACAATACCTCAAGGCAGCACAGGAATTGCTTGATGAAATAGTTAATGTCCGAAAGGCTTTGAAGCAAAATGGTTTGGAAAAGCAACAGAGTTTCCGGGACAATGGTTTAGATGGCTCCAAAGATTCTGACGGAAAATCTACCAGCCAATCTGTGCAAATATCTTCAGGTCCTAATGGTTCTGCTGCTAACTCTTCATCTGAGCTATCACCCGCAGAACGACAGAATTTGTTGGACAAGAAGACAAAACTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACCGGCAGTATTGCCACCAGATGCAGATTGTGGTGTCATCTTTTGATATGGTTGCTGGGTGTGGAGCAGCTGAACCATACACTGAACTTGCATTGCGCACAATATCACGCCACTTTCGGTGCTTGCGCGATGCCATTAGTGGCCAGATTCAAGCGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGTCAACAGAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAAAGGGGACTTCCTGAAACCTCTGTTTCAATACTCCGTGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCCAAGGATTCAGAAAAAGTTATGCTGGCAAGGCAAACAGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGTGATTCTGAGATGAGCAGCAACCTATTATCATCAGAGAACGCACTGAAAGCTCCAAGAGACGATGTTCAAGCTTCAGACAACAAAAGAGAAGAGTCTCAGGACAATTTAGTAACACTTGATAGTGTTCAGCACCATGCCTCAGAGTTGGACAGAGGGATCCAAAGTGGTGATCATGGGGAAAATGCCATGGATCCTAGAATTGGGAAATTGCAATGTGACCAAAGGTTCAACATGAACAACACTAACCCTTATTATGGTGATGGTTGCATAATGACTTCTACTGCTGCCACCTATGATTTATCAGAGTTGGGAAACATTGGCGTAGGTGGCCACGTGTCACTTGCATTGGAGTTGAGGAACTGTGAAAGTGAAGGATTTGGCACCAACAATGATGACATGCATAAAAGACGTAAGAAGACCACAGTGGCATCTACCCCTGAGGCTGATTTGCTAGATTACCATTTCACAGACACAGGAAAGCAACAAAACAAGTTTGGCAACCCTCATCTATTGCATGAGTTTGTTGTGTGA 1881 0.4508 MYPNQAFSSGSYAEMLSGNPLLPHNYSESVGGQNELKFITSMADTVTMQPIDGHSNAGDPACNSFANAGDSHSHVIPRTTQLGLVESEQNVQNQGLSLSLGSVMPSMQSVPNFSYQYPSTGFSSLMTASVPNLKGTSSKDDEASLQREFRTAECMASLASGGGFHKREGLYSPHPSMCLSEGQSDGSQGFSNTVLNSQYLKAAQELLDEIVNVRKALKQNGLEKQQSFRDNGLDGSKDSDGKSTSQSVQISSGPNGSAANSSSELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTELALRTISRHFRCLRDAISGQIQATQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKVMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSSNLLSSENALKAPRDDVQASDNKREESQDNLVTLDSVQHHASELDRGIQSGDHGENAMDPRIGKLQCDQRFNMNNTNPYYGDGCIMTSTAATYDLSELGNIGVGGHVSLALELRNCESEGFGTNNDDMHKRRKKTTVASTPEADLLDYHFTDTGKQQNKFGNPHLLHEFVV 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00318 626 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 28 592 - -
Cca05g00318 626 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 28 592 - -
Cca05g00318 626 Pfam Associated with HOX 194 337 IPR006563 -
Cca05g00318 626 MobiDBLite consensus disorder prediction 463 485 - -
Cca05g00318 626 MobiDBLite consensus disorder prediction 238 269 - -
Cca05g00318 626 Gene3D - 376 453 - -
Cca05g00318 626 SMART HOX_1 379 443 IPR001356 GO:0003677
Cca05g00318 626 MobiDBLite consensus disorder prediction 469 485 - -
Cca05g00318 626 Coils Coil 200 220 - -
Cca05g00318 626 SUPERFAMILY Homeodomain-like 380 446 IPR009057 -
Cca05g00318 626 CDD homeodomain 379 440 IPR001356 GO:0003677
Cca05g00318 626 Pfam Homeobox KN domain 396 435 IPR008422 GO:0003677|GO:0006355
Cca05g00318 626 MobiDBLite consensus disorder prediction 222 269 - -
Cca05g00318 626 SMART prehox3 188 338 IPR006563 -
Cca05g00318 626 ProSiteProfiles 'Homeobox' domain profile. 376 439 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00318 Cca-Chr5 6674195 6678981 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca05g00318 POX 1.1e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00318 05 6674195 6678981 Cca05g00318 05 6674195 6678981 ECH