Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00316 ATGTGGACTCATCTTGAGCGTCAAGCAGGAGGAAAGGTGAAGGGAATGGGTGAAAAACAAATAGAAGTCGACAAGCGTATTTTGCGTAACCAAATTGGTATTCTTAAAAAAGAGCTAGAATCTGTTAGGAAACACCGAAAGCAGTATCGTAATAGGCGTTTCTCAGTACCTGTGCCGGTGGTATCCTTGGTTGGTTACACAAATGCTGGTAAGAGTACACTTTTGAATCAACTAACTGGAGCAGATGTTCTTGCTGAGGATAAATTATTTGCAACTTTAGATCCAACTACTAGGAGGGTACAGATGAAGAATGGAAAGGAGTTCCTCCTAACTGACACTGTTGGTTTTATTCAGAAGTTACCTACTACACTAGTTGCTGCCTTCAGAGCTACACTGGAGGAGATAGCAGAGTCATCACTCTTGGTGCATGTGGTTGACATCAGTCACCCCCTGGCTGAGCAGCAGATAAATGCTGTGGACAAAGTCTTGTCAGAACTAGATGTATCATCAATTCCAAGATTGATGGTCTGGAACAAGGTTGATAACGTTAGCGATCCCCTGAAACTCAGGCTAGAAGCTGAAAAAAGAGAAGATGTTGTATGCATATCTGCTTTAAGTGGTGATGGCTTACAAGAATTTTGTAATGCAGTTCAAGACAGGCTAAAGGATTCTATGGTTTGGGTTGAAGCTCTGGTCCCATTTGAAAATGGGGACCTTCTCAGCACCATACACCAGGTTGGAATGGTTGAGAAAACTGAATATACAGAGCAAGGGACATATATCAAGGCACATGTGCCCCTGCGTTTTGCAAGAATGCTTACACCCATGAGGCAACTCCCTTGA 843 0.4294 MWTHLERQAGGKVKGMGEKQIEVDKRILRNQIGILKKELESVRKHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEIAESSLLVHVVDISHPLAEQQINAVDKVLSELDVSSIPRLMVWNKVDNVSDPLKLRLEAEKREDVVCISALSGDGLQEFCNAVQDRLKDSMVWVEALVPFENGDLLSTIHQVGMVEKTEYTEQGTYIKAHVPLRFARMLTPMRQLP 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00316 280 Gene3D - 1 44 - -
Cca05g00316 280 PANTHER GTP-BINDING PROTEIN 6-RELATED 1 269 - -
Cca05g00316 280 TIGRFAM GTP_HflX: GTP-binding protein HflX 1 220 IPR016496 GO:0005525
Cca05g00316 280 Coils Coil 32 52 - -
Cca05g00316 280 Pfam HflX C-terminal domain 191 259 IPR045498 -
Cca05g00316 280 Pfam 50S ribosome-binding GTPase 61 179 IPR006073 GO:0005525
Cca05g00316 280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 231 IPR027417 -
Cca05g00316 280 Pfam GTP-binding GTPase Middle Region 1 53 IPR032305 -
Cca05g00316 280 Gene3D - 58 226 IPR027417 -
Cca05g00316 280 TIGRFAM small_GTP: small GTP-binding protein domain 60 215 IPR005225 GO:0005525
Cca05g00316 280 PANTHER GTP-BINDING PROTEIN HFLX 1 269 IPR016496 GO:0005525
Cca05g00316 280 PRINTS GTP1/OBG GTP-binding protein family signature 61 81 IPR006073 GO:0005525
Cca05g00316 280 PRINTS GTP1/OBG GTP-binding protein family signature 128 146 IPR006073 GO:0005525
Cca05g00316 280 CDD HflX 18 221 IPR030394 GO:0005525
Cca05g00316 280 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 59 225 IPR030394 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00316 Cca-Chr5 6635959 6640329 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00316 05 6635959 6640329 Cca05g00316 05 6635959 6640329 ECH