Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00314 ATGACGGACGCTGAAGACGCTACACGACGTCGGAATGCGGTCGCCGAGTACCCTAAGAAGCCTCTTCCCAANNNNNNNNNNGACGGAGAAGGAGTTACACGACGTCGTAATGCGGTCGCCGAGTACCGTAAGAAGCTTCTTCAACACAAGGAACTCGAATCCAGAGTACGATTAGTCAGAGAGAATTTGCGTGCCTCGAAGAAGGAGTTCAACAAAACAGAAGACGATTTGAAGTCTCTTCAAAGCGTTGGACAGATCATTGGCGAAGTGCTTAGACCTCTCGACAATGAACGCTTGATTGTAAAAGCAAGTAGCGGACCTAGGTATGTGGTTGGCTGCCGCAGTAAAGTGGATAAGGAAAAGCTGACTGCTGGTACTAGAGTGGTTCTTGATATGACGACACTCACCATAATGCGAGCTCTTCCACGAGAAGTTGATCCGGTAGTTTACAATATGCTTCATGAAGATCCAGGTAATGTCAGTTATGCTGCCGTTGGTGGTTTATCTGATCAGATAAGGGAGCTGAGGGAATCAATTGAATTACCTTTGATGAATCCCGAGCTCTTCATTCGGGTTGGAATTAAACCTCCTAAGGGTGTTCTACTTTATGGTCCTCCTGGTACTGGTAAAACATTGTTAGCTAGAGCAATTGCCAGTAACATAGATGCTAATTTCTTGAAGGTTGTTTCTAGTGCAATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGGTATGCACGTGATCACCAGCCTTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGTCGTTTCAGTGAGGGAACAAGTGCTGATCGTGAGATTCAGAGAACGCTTATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAGGTTAAAATGATAATGGCAACAAACCGGCCTGATGTACTGGATCCTGCTCTCCTGCGTCCTGGAAGATTGGATAGAAAAATTGAAATTCCATTGCCAAATGAACAATCAAGGATGGAAATTCTTAAGATTCATGCTGCTGGCATTGCTAAGCATGGTGAAATAGATTATGAAGCTGTTGTAAAGCTTGCTGAGGGCTTTAATGGAGCTGATCTTCGAAATGTGTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAAGGCTGTTAGAAAACTGAATGATGCCAAGAAACTTGAATCCAGTGCTCACTACAGTGCCGATTTTGGCAAAGACTAA 1272 0.4355 MTDAEDATRRRNAVAEYPKKPLPXXXXDGEGVTRRRNAVAEYRKKLLQHKELESRVRLVRENLRASKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYAAVGGLSDQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERDYVIHEDFMKAVRKLNDAKKLESSAHYSADFGKD 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00314 423 PANTHER BNAC02G30020D PROTEIN 30 419 - -
Cca05g00314 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 408 IPR027417 -
Cca05g00314 423 SMART AAA_5 196 335 IPR003593 -
Cca05g00314 423 Gene3D - 334 404 - -
Cca05g00314 423 Gene3D - 153 333 IPR027417 -
Cca05g00314 423 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 30 419 - -
Cca05g00314 423 MobiDBLite consensus disorder prediction 1 16 - -
Cca05g00314 423 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 47 404 IPR005937 GO:0005737|GO:0030163|GO:0036402
Cca05g00314 423 ProSitePatterns AAA-protein family signature. 303 321 IPR003960 GO:0005524|GO:0016887
Cca05g00314 423 Pfam Proteasomal ATPase OB C-terminal domain 87 142 IPR032501 -
Cca05g00314 423 Pfam ATPase family associated with various cellular activities (AAA) 200 333 IPR003959 GO:0005524|GO:0016887
Cca05g00314 423 Coils Coil 49 83 - -
Cca05g00314 423 Gene3D - 48 152 IPR012340 -
Cca05g00314 423 Pfam AAA+ lid domain 356 398 IPR041569 -
Cca05g00314 423 CDD AAA 166 333 - -
Cca05g00314 423 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00314 Cca-Chr5 6623656 6626642 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00314 05 6623656 6626642 Cca05g00314 05 6623656 6626642 ECH