Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00310 ATGTCAAGCAATTTTTCTACAGTGGTGAAGAATCCGGCAGAATCTTCAATTCCAAATCTTTCTTTTTCAATACCTTCAGTTTTCTCGACGCCTACAGCGGATCCTTTGCCTAATCATAATTATCCCCATCTTCCCAACACTACCCCGACAAGATGGGCACATCGATCACCAGCACACCCTCTTTTGAGACAGATTTCTGATAGTCGAATCATGGGTCTGAAATCACCCGATAACTCAATTTCTGAAGGAAGGCCATCATTTGTACTTTCTACTTGCAGTAATGAAATGGCAGCTGGCTCCCTATGCGGATCATCTGATGGCTGGTCAATGCGCACCTTTTCTGAGCTGGTGGCCTCATCCCAGAGAGAAAGGTGGTCTTTCGATAGTGAGTGTTTTGGCTCAGGTCGTCACAAGATAAGTGGATGTGGATCCAGTAGCAGGTTCTCATATTCTCCCTCCATGGAACTACAATCTTGTGGGGCTTGCTCAAAGCTTTTGACCGAGAGATCAACATGGAGCAACCAGAAGTTTATTACTGGCAGCGACCTCTCAGTTGTTGCTGTACTGGTCTGTGGTCATGCATATCATGCAGAATGCTTAGAGGCTATGACACCAGAGGCAGATAGGTATGATCCAGCTTGTCCAATTTGTATGGTTGGAGACAAGCACTTGTCAAAGTTGTCTAGAAGAGGTCTTCGAGCTGAATCAGAGGTTAAGGCAAAGAACCACAAGATATCCAGAAACCGTGTAGTTGATAGCTACCTTGATGGCGATTTTGATGTTTTTGATCGCCAAAAAGATGTGAAATTGGGAGGAAAAGTTTCAAAAATGGAGCCTAGCTCCAGTACGAGGAGCTCATTTGGAAAACCATTCTTGAGGCGGCACTTTTCACTTGGGTCCAAGTGGAGCCGGTCCCTGTCTGAGAATGATTCTGCCAGGAAGAAAGGCTTCTGGGCAAGATATCGTAAAGATTGA 975 0.4523 MSSNFSTVVKNPAESSIPNLSFSIPSVFSTPTADPLPNHNYPHLPNTTPTRWAHRSPAHPLLRQISDSRIMGLKSPDNSISEGRPSFVLSTCSNEMAAGSLCGSSDGWSMRTFSELVASSQRERWSFDSECFGSGRHKISGCGSSSRFSYSPSMELQSCGACSKLLTERSTWSNQKFITGSDLSVVAVLVCGHAYHAECLEAMTPEADRYDPACPICMVGDKHLSKLSRRGLRAESEVKAKNHKISRNRVVDSYLDGDFDVFDRQKDVKLGGKVSKMEPSSSTRSSFGKPFLRRHFSLGSKWSRSLSENDSARKKGFWARYRKD 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00310 324 ProSiteProfiles Zinc finger RING-type profile. 159 217 IPR001841 -
Cca05g00310 324 SMART ring_2 159 217 IPR001841 -
Cca05g00310 324 PANTHER EXPRESSED PROTEIN 1 318 - -
Cca05g00310 324 SUPERFAMILY RING/U-box 158 218 - -
Cca05g00310 324 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 1 318 - -
Cca05g00310 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 219 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00310 Cca-Chr5 6586116 6589813 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00310 05 6586116 6589813 Cca05g00310 05 6586116 6589813 ECH