Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00307 ATGTCTGGGCCTCTTGATCGCTTCGCACGTCCCTGCTTTGAAGGGTTTTCTGGTCACGATGAAAGGAGGGAGAGGAAATCGGATTTTGAGAACTCGGAAGATGATAGGCGAACGAGGATTGGTAGTTTGAAAAAGAAAGCGATTAATGCTTCAAGCAAGTTCAGGCATTCTCTTAGGAAGAAAAGCAGCAGGAGGAAGACCGCGAGCCGCAGCAATTCTGTTTCCATTGAGGATGTTCGAGATGTTAAGGAGCTCCAAGCAGTGGATGCTTTTCGACAAGCGCTTATGTCGGATAACTTGTTGCCTTCAAGACATGATGACTATCATATGTTACTCAGATTCTTGAAAGCAAGGAAATTTGATATCGAGAAAGCGAAGCACATGTGGGCCAACATGATCCAGTGGAGGAAAGAATTTGGTACTGATACAATTATGGAGGATTTTGAATTCAGTGAGTTGAATGAAGTCCTGCAGTACTATCCACATGGTTATCATGGTGTGGATAAGGAAGGAAGACCTGTTTATATCGAGAGGCTAGGTAAAGTTGATCCTAATAAGCTTATGCAAGTGACTACCATGGAAAGGTATTTGAGATACCATGTGCAGGGTTTTGAGAAAACGTTTGCTGTTAAGTTTCCTGCATGTTCCATTGCGGCAAAGAGACATATAGATTCAAGTACAACCATTTTGGATGTTTACGGCGTGGGTTTCAAAAACCTAACCAAATCTGCACGGGAACTCATCATGCGGCTGCAGAAAATTGACGGTGATTACTATCCAGAAACATTATGTCGAATGTTTATAATCAATGCTGGTCCTGGTTTTAAGCTGCTTTGGAACACAGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATAAATGTTCTTGGAAACAAGTTCCAGAACAAATTACTTGAAGTTATTGATGCAAGTGAGCTGCCTGAATTTCTAGGTGGTTGTTGCACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGACCATGGCAGGATCCAAACATTATAAAGATGGTTCTTAGCGGTGAAGTGCAATGTTCTAGGCAAATAGTAACAGTTTCTAACGATGAGGGGACAGTCATTCAATGTGATAAGGCATGCTTTCCAATGCCAATAAGAAGTAGTGATACATCAACAGCAGAATCAGGATCTGAAGTCGAAGATATCACTTCTCCCAAAGCAAGTGGGAATTATACAAACCCTAGGTTAACTCCTGTCCATGAAGAAGCAAGATTGATTGGTAAGGCCAACCATTCTGACGGTTTCTCTGCATATGATGAGTATGTTCCCATGGTTGACAAAGCTGTTGACCTTGGATGGAAGGAGAAACAAGTAACAACTCAAAACTCACATGGGTCAACAGAAATTTTCTTATTGAGGACTGGAAAGTCTGGCGGCAAGTGTGCATATATCTGGGCTATTATCGTGGGCTTCTTTGTGGCCATCTTTACTATTGCACGTTCACTAGCATTACGTGTGACTAAGGGAATGCATGACACTAAATCTGATTCTGCCAAAAATATGCCTAACATGACTGTGCATTCAATAACTAAGGAGGTATCTCGTCCCCCATCTCCTGTTCCCATATTAACGAAGGCAGAACTCATCTCATCTGCTTTGAAACGCCTTGGTGAGCTTGAAGAGAAGGTTGACATGCTACAGTCAAAACCAAATGTGATGCCATATGAGAAAGAGGAGCTGCTTAATGCTGCTGTTTATCGTGTGGATGCATTGGAAGCAGAATTGATTGCTACAAAGAAGGCTTTATACGAAGCTTTGATTAGACAAGAAGAACTTCTGGCGTACATAGATAGTCAGGAGAGAAGCAAATTCGAGAAAAAGAAGTTTTGCTGGTGA 1881 0.4163 MSGPLDRFARPCFEGFSGHDERRERKSDFENSEDDRRTRIGSLKKKAINASSKFRHSLRKKSSRRKTASRSNSVSIEDVRDVKELQAVDAFRQALMSDNLLPSRHDDYHMLLRFLKARKFDIEKAKHMWANMIQWRKEFGTDTIMEDFEFSELNEVLQYYPHGYHGVDKEGRPVYIERLGKVDPNKLMQVTTMERYLRYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVYGVGFKNLTKSARELIMRLQKIDGDYYPETLCRMFIINAGPGFKLLWNTVKTFLDPKTTSKINVLGNKFQNKLLEVIDASELPEFLGGCCTCIDQGGCMRSDKGPWQDPNIIKMVLSGEVQCSRQIVTVSNDEGTVIQCDKACFPMPIRSSDTSTAESGSEVEDITSPKASGNYTNPRLTPVHEEARLIGKANHSDGFSAYDEYVPMVDKAVDLGWKEKQVTTQNSHGSTEIFLLRTGKSGGKCAYIWAIIVGFFVAIFTIARSLALRVTKGMHDTKSDSAKNMPNMTVHSITKEVSRPPSPVPILTKAELISSALKRLGELEEKVDMLQSKPNVMPYEKEELLNAAVYRVDALEAELIATKKALYEALIRQEELLAYIDSQERSKFEKKKFCW 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00307 626 MobiDBLite consensus disorder prediction 13 42 - -
Cca05g00307 626 SUPERFAMILY CRAL/TRIO domain 152 346 IPR036865 -
Cca05g00307 626 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Cca05g00307 626 Coils Coil 544 564 - -
Cca05g00307 626 CDD SEC14 153 320 IPR001251 -
Cca05g00307 626 MobiDBLite consensus disorder prediction 1 42 - -
Cca05g00307 626 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Cca05g00307 626 SUPERFAMILY CRAL/TRIO N-terminal domain 83 148 IPR036273 -
Cca05g00307 626 Gene3D - 59 139 - -
Cca05g00307 626 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Cca05g00307 626 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Cca05g00307 626 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Cca05g00307 626 MobiDBLite consensus disorder prediction 54 75 - -
Cca05g00307 626 Pfam CRAL/TRIO, N-terminal domain 105 131 IPR011074 -
Cca05g00307 626 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 623 - -
Cca05g00307 626 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 3 623 - -
Cca05g00307 626 SMART sec14_4 152 323 IPR001251 -
Cca05g00307 626 MobiDBLite consensus disorder prediction 382 409 - -
Cca05g00307 626 Gene3D - 140 350 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00307 Cca-Chr5 6507850 6514448 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00307 05 6507850 6514448 Cca05g00307 05 6507850 6514448 ECH