Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00306 ATGGAAACCAACTCAGTTTCCAAGCTTCTGGTACTTGTCTTCACTGTTCTGTTTGTAGGTTCTGAGTTGATCCATTGCAGTGTCACCTATGATAGGAAAGCCATTATCATCAATGGCCAAAGGAGAATCCTCATCTCTGGCTCCATTCACTACCCCAGAAGCACCCCTGAAATGTGGGAGGATCTAATTAGGAAGGCGAAAGATGGAGGCCTTGATGTTATCGACACTTATGTGTTCTGGAATGTTCATGAACCATCTCCTGGCAATTACAATTTTCAAGGGAGGTACGATCTGGTACGGTTCATTAAGACAGTGCAAAGGGTTGGGCTCTATGTCCACCTTCGCATTGGACCTTATGTATGCGCTGAGTGGAACTTTGGAGGGTTTCCTGTTTGGTTGAAGTATGTTCCTGGCATCAGCTTCAGAACAGATAATGGTCCTTTCAAGGCTGCAATGCAAAGTTTCACTCAGAAAATAGTTCAGATGATGAAGAACGAAAAGCTATTTCAGTCTCAGGGTGGTCCAATCATTCTTTCTCAGATTGAGAATGAGTATGGACCTGAAAGCAGGGCACTGGGAGGTGCTGGTCATGCATACACAAACTGGGCTGCAAAGATGGCTGTTGGATTGGGTACTGGTGTCCCCTGGGTAATGTGCAAGCAAGATGATGCCCCAGATCCAGTGATAAATGCATGCAATGGTTTTTATTGTGATGACTTCTCTCCAAATAAACCATACAAACCTAGCCTTTGGACTGAGTCTTGGAGTGGTTGGTTCACAGAATTTGGTGGTCCAATTTACCAACGACCAGTTCAGGATCTAGCATTTGGGATTGCCCGTTTCATACAAAAGGGTGGCTCATTTTTCAATTACTACATGTACCATGGAGGAACTAATTTTGGACGATCAGCTGGAGGGCCATTCGTTACTACAAGCTATGACTATGATGCTCCAATTGATGAATATGGTTTGATCAGGGAACCTAAATATGGTCATTTGAAGGACCTTCATAAAGCTATTAAGCAATGTGAACGGGCTTTGGTTTCTTCAGATCCCACTGTCACATCATTAGGAACGTATGAGCAGGCTCATGTGTTCTCTTCAAGAAATGGAGCATGTGCAGCTTTTCTTGCAAACTACAATTCAAATTCTGCAGCAAAACACCAGCATCAGATGGCACTGACTTTGAAAGAACAAGATGCAGCTCACTGGGTTTACAGAGGCGAAGGAGCCGTGAATCTTGTGCTCGCATACACCGGATCCTCTCCTTCTTTTATTGGGAAAGTGATCCGCATACGTAAGGCTCCGAGGAATGGATCGCAGTCAAAGGGTGCGAGTGTGAGGAATAGCATTGCTTTGACTCCACATGAACGTGTCCTCTGGAAAGATGTGCATCAACTTATTTCATCCTCGGACAAGGAAATTGTTGGTCAGCTATATGTGCAGCATGTTATGAAGCCCTTGCTTGGTTCCAACTATGTTGATGCTGGGATGTATGTCCTTGTGACCAAGGAATTCCTTGAGTTGGTTGAGAAGAATGTTACTGGTCAGCGTCCTGCATGGCGGGTTGATGCTGCCCGGGTTGATACACATTGTGATTTTGGCCTGCTCATGTCTGATCATTCGCTCTTTGTTCATGGTAATGAGATGTGTATCATTGAAATTCCCAAATGCGGATTTCTTCCGCTTTCAAGATTCATATCTGAAGGAAATGCAATCAAAAGGAGAATAACTCGATTTGAAATGCACCAAACTCTGAAATTGCTTCAAGGAGAGATATCACAGCTGAGCGAGTACAATCCACTTGATCTGTTCTCTGGATCCAATGTAAGAATTCAGAAAGCTATTAGAGGTCTTCTTACAACTCCTCAAAACAATTTTCGTGTATTTTTGAATGGCTCTCTCATACTTGGAGGACTGGGAGGTGTTTCAAAAGATACAGATGTATGTATTGCTAAAGCATTTGAAGATGAACTTAAGTCAGTTATTCAAGCTGATGATGGTCAATGTACAGATAACTTATTTACTTTAGTTACTGAGGCGTTGCAAAAATCAGGAGTTCTTGATAATCTCCTAGAGGTTCAGAAGCTTGACAATATTGACATAGAAGGAGCCATCCATGCATACCATGACATTGTTTCTCAACAGTGCATGGTATGTAGGGAACTGAATGAAGAACAGGCACAAATATATACATCTTTGCATTCAGCTTCATTGGATGAAAAGTTGAGAATTGTGAAGAACTACCTGATAGCAACAACTGCAAAAGACTGCAGTTTGATGTTGTGTTTTAGACCAAGGAATGAGGGGGATTCTGGATCTGTGTACAATAATGTATATCTCGAGTCAACTAAACAGGCCTTTGATTTTAAGGTGTATTTTATTGACCTCGATTTAAAGCGCTTGAGTAAAGTGGAAGACTACTATGAGTTAGATAAGAAGATAGTGAGCTGCTACAGACAAACGATCAAAATGGATCAAGAAGATATGAAGTGA 2496 0.4215 METNSVSKLLVLVFTVLFVGSELIHCSVTYDRKAIIINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNVHEPSPGNYNFQGRYDLVRFIKTVQRVGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKAAMQSFTQKIVQMMKNEKLFQSQGGPIILSQIENEYGPESRALGGAGHAYTNWAAKMAVGLGTGVPWVMCKQDDAPDPVINACNGFYCDDFSPNKPYKPSLWTESWSGWFTEFGGPIYQRPVQDLAFGIARFIQKGGSFFNYYMYHGGTNFGRSAGGPFVTTSYDYDAPIDEYGLIREPKYGHLKDLHKAIKQCERALVSSDPTVTSLGTYEQAHVFSSRNGACAAFLANYNSNSAAKHQHQMALTLKEQDAAHWVYRGEGAVNLVLAYTGSSPSFIGKVIRIRKAPRNGSQSKGASVRNSIALTPHERVLWKDVHQLISSSDKEIVGQLYVQHVMKPLLGSNYVDAGMYVLVTKEFLELVEKNVTGQRPAWRVDAARVDTHCDFGLLMSDHSLFVHGNEMCIIEIPKCGFLPLSRFISEGNAIKRRITRFEMHQTLKLLQGEISQLSEYNPLDLFSGSNVRIQKAIRGLLTTPQNNFRVFLNGSLILGGLGGVSKDTDVCIAKAFEDELKSVIQADDGQCTDNLFTLVTEALQKSGVLDNLLEVQKLDNIDIEGAIHAYHDIVSQQCMVCRELNEEQAQIYTSLHSASLDEKLRIVKNYLIATTAKDCSLMLCFRPRNEGDSGSVYNNVYLESTKQAFDFKVYFIDLDLKRLSKVEDYYELDKKIVSCYRQTIKMDQEDMK 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00306 831 Pfam Inositol-pentakisphosphate 2-kinase 406 814 IPR009286 GO:0005524|GO:0035299
Cca05g00306 831 PANTHER INOSITOL-PENTAKISPHOSPHATE 2-KINASE 384 827 - -
Cca05g00306 831 SUPERFAMILY (Trans)glycosidases 27 344 IPR017853 -
Cca05g00306 831 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Cca05g00306 831 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Cca05g00306 831 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Cca05g00306 831 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Cca05g00306 831 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Cca05g00306 831 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Cca05g00306 831 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Cca05g00306 831 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Cca05g00306 831 Gene3D Glycosidases 24 344 - -
Cca05g00306 831 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Cca05g00306 831 PANTHER INOSITOL POLYPHOSPHATE KINASE 1 384 827 IPR009286 GO:0005524|GO:0035299
Cca05g00306 831 Gene3D - 392 551 IPR043001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00306 Cca-Chr5 6488813 6497572 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00306 05 6488813 6497572 Cca05g00306 05 6488813 6497572 ECH
Cca05g00306 05 6488813 6497572 Cca07g00344 07 4562027 4568853 PCT