Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00303 ATGGAGGCAACTATGGCAATTGCAACCCTGAATGCCAGTGCTAATCTTGCTACTAAGGGGATTGGAAGGGACAGAATTTCAGGGTTCTGGGGTGAGAATACAAGGGGAAGTGTTAACGTCAGGTTTTGTAGTATTCAGCCATGCAAGACTTCAAAAACTTCAAGTTTCAAGCCTGGATTTGCACACGCTGTTTACACACCAGATGTGGACAAAGAGTCCCCGGTAATCCAGGAACCTGTTTTTCGGAGTCCAAAAGAAAATAAGCCAGAAAATGTAGGTGCAATCATATTGGGTGAAAGTGCTGGAACTCGATTGTTTCCTCTTACCAGCACAAGAGCTAAGCCCGCTGTTCCACTTGGAGGGTGTTACAGGCTTATAGATATTCCTATGAGCAATTGCATCAACAGTGGTATCAGAAAAGTGTACGTTTTAACACAGTACAACTCTTTCTCCCTCAATGGCCATCTGTCTCGCACATATAATTTTGAAACTGGAGTGAACTTTGGAGATGGTTTTATGGAGGTCATGGCTGCTACTCAGACTTCTGGAGAGTTGGGGAAGGAATGGTTCCAAGGGACAGCTGATGCAGTGAGACGCTTTATTTGGGTTTTTGAGGATGCCAAGAACAAGAATATTGAGCACATACTGATAATTTCTGATGATCATCTTTGTCAGATGGACTATATGAAGCTTGTTGAGAAACATGTTGCGACAAATGCTGATATCACAGTTTCATGTGTACCTATGAATGAAAGCAGTGCATTTGACCATGGGCTGATGAAAATTGATAGAAAGGGAAGGATTACAGAGTTTGTGAAAAAACCAGAAGGATCAGATATGAAGGCAATGCGTGTTGATACCACTCTCTTAGGCTTAGGGCCAGATGAAGCAAAGAAATATCCTTACATTGCACCCATGGGTGTTTATGTATTCAGAACTGAGACCCTGCTGAAACTGCTGAGATGGAGCTTTCCTTCTTGCAATGACTTTAGATCTGAAATTATCCCATCTGCTTTGAGGGACCACAAAGTCCAAACATATTTGTTCACGGACTACTGGAAGGATATTGGCTCTATTAAGTCCTTCCTTGAAGCGAATCTGGAGCTAACAGAACAGTCTCCAAAATTTGAATTCTATGATTCGAAGAAGCCTTTCTTCACTGCCCCAAGATTCCTACCACCTACTATAGTAAGAAAATGCAAGATTGTGCAGTCAATTGTTTCTCATGGTTGCGTCTTGAGTGGGTCTAGAGTTCAACATTCTATTATTGGTTTGCGCTCACGTTTAGAGTCCGGTTCAGATCTTCAGGATACCATGATGATGGGTGCTGACTACTATCAAACTGATTCTGAAATTGAAACTCTGCTGAAAGAAGGAAAGATTCCAGTTGGTGTTGGAGAGAATACCAAAATCAGGAATTGCATAATCGACAAAAATGCCAAGATAGGAAGAAATGTGATTATTACCAATGCTGATGGTGTTCAAGAAGCAGACAGGCCTATGGATGGATTCTACATTAGATCGGGCATCGTAGTTGTAGCAAAGAATGCAACAATTAAAGATGGAATGATCATTTGA 1578 0.4157 MEATMAIATLNASANLATKGIGRDRISGFWGENTRGSVNVRFCSIQPCKTSKTSSFKPGFAHAVYTPDVDKESPVIQEPVFRSPKENKPENVGAIILGESAGTRLFPLTSTRAKPAVPLGGCYRLIDIPMSNCINSGIRKVYVLTQYNSFSLNGHLSRTYNFETGVNFGDGFMEVMAATQTSGELGKEWFQGTADAVRRFIWVFEDAKNKNIEHILIISDDHLCQMDYMKLVEKHVATNADITVSCVPMNESSAFDHGLMKIDRKGRITEFVKKPEGSDMKAMRVDTTLLGLGPDEAKKYPYIAPMGVYVFRTETLLKLLRWSFPSCNDFRSEIIPSALRDHKVQTYLFTDYWKDIGSIKSFLEANLELTEQSPKFEFYDSKKPFFTAPRFLPPTIVRKCKIVQSIVSHGCVLSGSRVQHSIIGLRSRLESGSDLQDTMMMGADYYQTDSEIETLLKEGKIPVGVGENTKIRNCIIDKNAKIGRNVIITNADGVQEADRPMDGFYIRSGIVVVAKNATIKDGMII 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00303 525 SUPERFAMILY Nucleotide-diphospho-sugar transferases 93 486 IPR029044 -
Cca05g00303 525 Gene3D Hexapeptide repeat proteins 391 525 - -
Cca05g00303 525 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 9 525 - -
Cca05g00303 525 Pfam Nucleotidyl transferase 94 371 IPR005835 GO:0009058|GO:0016779
Cca05g00303 525 CDD ADP_Glucose_PP 94 356 - -
Cca05g00303 525 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 9 525 IPR011831 GO:0005978|GO:0008878
Cca05g00303 525 CDD LbH_G1P_AT_C 393 519 - -
Cca05g00303 525 SUPERFAMILY Trimeric LpxA-like enzymes 389 525 IPR011004 -
Cca05g00303 525 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 80 390 IPR029044 -
Cca05g00303 525 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 189 197 IPR005836 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00303 Cca-Chr5 6392792 6397406 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00303 05 6392792 6397406 Cca05g00303 05 6392792 6397406 ECH
Cca05g00303 05 6392792 6397406 Cca07g00347 07 4607851 4612040 PCT