Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00302 ATGAAGGTTGGTTTCTTTCTGGTTTTTATGGTTATCTGTGTGATGGTAGAATGGGGGATGTTGTCACCCCAAGTAGGAGCTGAGGATGATGGGTTTGTGAAAGTAAGAGGGGTGCAGCTTCTGTTGAATGGGAGCCCCTACTATGCCAATGGCTATAATGCATATTGGTTAATGTATATGGCCTCTGATCCATCTCAGAGAAACAAGGTTTCATCTTCTTTTCAAGAGGCAACAAACCATGGACTTAACATAGCAAGGACATGGGCTTTCAGTGATGGTGGATATAAGCCTCTCCAATACTCTCCTGGATCCTACAATGAAGACATGTTCCTGGGGCTGGACTTCGTAATATCTGAAGCCAGACGATATGGGACCAAGCTGGTGTTGAGTTTGGTGAATAACTATGATAACTTTGGAGGAAAGAAACAATATGTGGACTGGGCAAGGAGCCAGGGCCAGTCCATTATTTCTGAAGATGATTTTTTCACAAACCCTCTAGTGAAACAATACTACAAAAACCACATCAAGAGTGTTCTAACGAGACGTAATAACTTCACTGGAGTGGTTTACAAAGATGATCCAACTATAATGGCTTGGGAACTCATGAACGAAATTAGATGCCCTTCAGATCAATCAGGAAACACCGTTCAGGCTTGGATTACTGAGATGGCATCTTATTTGAAATCCATTGATGGAAACCATTTACTAGAAGCTGGTCTTGAAGGCTTCTATGGGCAGTCCAAGCAAGAGTATAATCCAAGCTTCCGAGTAGGAACAGATTTCATTGCAAACAACCAAATCCCTGGCATTGATTTTGCAACAGTTCATTCCTACCCTGATCAATGGCTACCTGGTTCAAGTTATGAAGAACAAATCTTATTTTTGGACCGTTGGCTCAATGATCACATACAAGATGCAAAGAACACCATTCAGAAACCAGTTCTCTTTTCGGAGTTTGGGGTATCAACAACAAATATCAGCACTAACGACTCAACACTAAGGGACCAATTTTTCAACATGGTCTATTCTGCAATCTATTCATCAGCAAGTGATGGCGGGGCAGCTGTTGGAGGCTTATTTTGGCAACTTCTAGGACAAGGAATGGATTCCTTTCGAGATGGCTATGAAGTATCCTTAGATGAGAGTTCCTCAACTGCTACTTTGATTGCCCAAGAGTCTCAAAAGCTAAACAGAATCCGGATGAAGATTTTCCCTAGAGTGAAAAATTCTAAGAAGTGGAATAAAGCAAGGGATGTTAGAAGCTCAAGATGGAAGGGTGGTGCTAATAAAAGAAACTAA 1299 0.4157 MKVGFFLVFMVICVMVEWGMLSPQVGAEDDGFVKVRGVQLLLNGSPYYANGYNAYWLMYMASDPSQRNKVSSSFQEATNHGLNIARTWAFSDGGYKPLQYSPGSYNEDMFLGLDFVISEARRYGTKLVLSLVNNYDNFGGKKQYVDWARSQGQSIISEDDFFTNPLVKQYYKNHIKSVLTRRNNFTGVVYKDDPTIMAWELMNEIRCPSDQSGNTVQAWITEMASYLKSIDGNHLLEAGLEGFYGQSKQEYNPSFRVGTDFIANNQIPGIDFATVHSYPDQWLPGSSYEEQILFLDRWLNDHIQDAKNTIQKPVLFSEFGVSTTNISTNDSTLRDQFFNMVYSAIYSSASDGGAAVGGLFWQLLGQGMDSFRDGYEVSLDESSSTATLIAQESQKLNRIRMKIFPRVKNSKKWNKARDVRSSRWKGGANKRN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00302 432 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE-LIKE PROTEIN 5 421 - -
Cca05g00302 432 PANTHER - 5 421 IPR045053 GO:0004553
Cca05g00302 432 MobiDBLite consensus disorder prediction 411 425 - -
Cca05g00302 432 MobiDBLite consensus disorder prediction 411 432 - -
Cca05g00302 432 Pfam Cellulase (glycosyl hydrolase family 5) 65 329 IPR001547 GO:0004553|GO:0071704
Cca05g00302 432 Gene3D Glycosidases 28 400 - -
Cca05g00302 432 SUPERFAMILY (Trans)glycosidases 32 387 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00302 Cca-Chr5 6387542 6392458 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00302 05 6387542 6392458 Cca05g00302 05 6387542 6392458 ECH
Cca05g00302 05 6387542 6392458 Cca07g00348 07 4612333 4614543 PCT