Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00299 atggagttcggagccgccaccgctgccgccgCGACTCTTACGAAGAAGCTCTCCAACGGCTACGGCGTCTCCGGAAGATCCGCGTACGACGGCGTTTTCGCCGCTCCGATCAAGCTCCGCGCTCCGGGCCTCTCCTCTCATTTCGACGACTACCGCGAGATTTTCGGCGCCGCCGGAGCTTCGCTCGGCTCCTCGATTCCGATTCTCGAAATTCCGGACGAGAGGAGAAGGAACGACGAGGTTCGCCGCTCGAAGCTCGATTACGCCAAAGTCTTCGGCGGGTTCGGAAATCTCGACGCTGCAGTGCCTTTTGAGGAGCTAATCGCTGAGCCTAAAGAGAAAGATAGCTTCACAGCACGGAGCAAGGTCAAAGGAGAGAATCAATCTTGCCGACAAGATCATACTAATTGTTCAAAGGAAGTTCCGGTGGCATCATGGTCATCCAACCATGCCAAAAGGATCAATATGTCATACCATAAAGTTAACCAAGGAAATGAAGATGGAACAAATGGGACGACACATATTGCTCAACTCCGTGCTATCCCTGCTTACACTCAATTAATTGAAGAAGTCAATCCAGTGAAGATGAACAGAAAAAATAAGTCTATACCAGAGGCACAAGATACTTATTCTGGTAGTCATGGCAACGAGGGGATAGAAGAAAGTGTAAATTCTTCTAAATCATTCGCTGGTGCTTCACCTGATAATTCTAAGGACCAGTCTTCCAACAACAGAGAGAAAGTTAAACGTAGATCTGATTCTATTGACCTGTTTTTTGATGAATGTGAGATTAGCAATGGAAGTGATGGAGCATGTCACGTCAAAGTTCCTCTATCAGAGACTACAACAGGTAACTTAAATAATCATCATGATGCTATGAAACCAATGCCTACCAAATGCCAGGCATCTAAAGGTGTTTCTGGTGCTGATTCGCCATCATACTCTGATGACATGGTAGACTCAAATTCAGAGGTAGCTGCTTCTGTAGCTGCTTTAAGAAAGGCAATAGAAGAGGCTCAAGTAAGAATGAAGGTTGCAGAAGAATTGATGAGAAGAAAGAAAGAAGGTTTTCCAGATCGTGTCAAACGTAAGTCTAATATTGAATTGAAAGCTGAAGGGAAAAAAGAGACTAAAGTCACATATAAAACAATGAAAATTGAAGAGATTAATGCAAAGCAAACATTTGGAGAGATGGATGGTTTGCCAAATGCTTCTTATGAGGAAGTGAAGTCGGTGATGAGAACAGAGCAAGTGAGGTCAGATTTGGGGGCAAGTGAAACATCTGTTGCTAAAGAAGCTGTACGAGAAGCACAGAAGAAATTGAAATCAACTCAAGCGAAACATAAGAAAGAGTTTGAACAGAAAGAAGCATATCATAAAGGAAAAATTCTTGAGCTTAGAGAGGCAGAAAATAATAAGAAACAGCTGTACATTAAAAACACAGATATGAATGCCTCTGATAAACCAGAAGAATCCGATCATACAATTGAAATGGTTAAGGAATATTGGAGGCCGGAGAATAATGAAGACAAAGTCCGCATGGATATTGAATCAAGTGCATGTGAAGAACCTATCGAGGAAACTACACATAGGTGTCAAGAAGTAGTAGATGAAACAAAATTGATTCAGGAGTCACTTGAAAATGGAACATTGGACAAGAGTTTGAAGTTTAATGAAAATGGGGAAGTTGAGAATAAGGTTACACCTTTTCATGAACCAGAAGACTATGAAAGAAACCTTGGTGGGCAAGGGTCAACAACAGTAAATGGGGAAAAAGTGGCCTGTAAGCCAGAAGAAGACAGTAACAAATTTGAAGGGTCATTTGAGCTGGAAGAATGCAAAACAAATTTGAGAGCTGTTCAGGAACTGGGAGAGGTTGAGAAGAACATTACTCAAGAGCAAAAAGGAAGTGTTGATATAGTTGCAGCATCCAGTGAGCTGGAAGAATGTGAATTGGCAGAGATTCTGGAGCGCATTAACAATGATAATATGAGCAGTCAACATGGCCCAGATTTGTTAAGTAAGGATAAAGACACAGAGAACCTGGGGTGCATAGATGATAGAAAGAAAAAGAATGAATCTGGTTTTCAGGATATCAATCAAGAGACTGAACATTCCTGTCAAAGAGAAGCCACTGATAATACTTTTAGCAATATCAATGTTCAGGAAATGCTGGCGGATGTTGCGGACCGTATTCATAATGAGGAAGAAATTTATGAAAGAAATACTGAGGAAAGTAAATTGGATGGAATTGGTATGGTTCTAGATGCCCAAGAAAGTGAGAATGAATTCGAAGGAGCCACTCAACTGATGGACGAAAATGTGAGGGAAAGGATAGGTAACAAGGAGCCAGTAGAAGCAATTAGAGTGACTCAATCTTCTGCTAGTAGTGAGGAGGTAAAAGCAGAGGAAACTGGCAAGACCACAGAAACCAGTTCAGGCTATGAGTCAGATGAAACTGAGAAGTTGAACATAACTCAGGTAGCTGATACAATTATTGAAAATGAGGTAACTCTGGAAGTGAATCCAGAGGTTCATTCATGTTATGTGCTGGATGATGTAATGGTAGGAAGTAGTGCTTCATTTCAACATCAAGAGAGATATGAAGAAACAGACCCCGTTCTTCAGGAGACAAATGATTTCCATGATAAACATGCAGAGACCTCTGAAGGTGCTGCCACAAATATTGGTGATACTGACATCAAGGATAGTCAAAATGAAGATCAGTGCCGGGAAAAGGCAGAAAATGACTGCAATCTGGAAATGCTCGTTGAAGACACAACTCCTGAGTCTGTAGAAATCTGCAAGGATGCAAAAGAGACTGGGGTTGCATCAAATGAAGCAGTAGGTGAGAATCGATCTAACTCGTCTAACGAGGAAAAACTGTTTGACAATGAACACAATATAGATGAATCTCAGATTCCTAGTACATCTGATTGGAAATCAAGTCATTTCAAAGAAGAGGAGGTTGAATCAAGTCACAGCAATCTAAGGGAAAGTAATCAAGCATCTGTAACAATGGAAGAGAAGGAAGCAAATGATAACTTGCATAAGGAAGAGCTGGAAAAGGAACACCTCAAAAAACTTGATGAAGCAAAAGCGAGGCAAAGAGAAAGAGAAAAGGAGAAGTTAGCTGTAGAAAGAGCAATTCGTGAAGCACGTGAAAGGGCATTTGCTGGTGCCAGAGAAAGGGCAGCTCTAGAGAGAGCTGCAGCAGAAGCACGTCAGAAAAACATTTCTGATGGACGGGAAAGGCTAGGTAAAACCACTAGTCAGGCAAATGAGAAGACACCGGCAGAGAAGGCTGCTATGGAAGCAAAACTTAAAGCTGAACGTGCTGCTGTGGAGAGAGCAACTGCAGAGGCACGGGCACGGGCACTAGAAAGGGCACTCTCTGAGAAAGCTGCCTCCGATGCAAGAAATAAATCTGACAAATCTGTTGCAGGCTTTGGGGTTTCCCGTGATAATGTAACAAAGCAAAATTTCCATTCAAAATCTTTCAGCTATGGTGTTCGTGACTCTAGTGATGTATTTGATGGAGCTGATGGCGATTCTGCTCAGAGATGTAAGGCTAGGTTTGAGAGACATCAGAGAATAGGGGAACGTGTGGCAAAGGCTCTTGCAGAAAAGAATATGCGTGACCGGCTTGTGCTGAAGGAGCAAGAGGAGAGAAATAGGGTAGCAGAAGCACTCGATGCTGATGTTAAAAGGTGGTCAAGTGGGAAGACAGGAAACTTGAGGGCATTGCTTTCAACATTACAATATATCCTTGGCCCCGATAGTGGTTGGCAACCGATTCCTTTGACAGATACCGTAACCTCTACTGCTGTAAAGAAAGCTTATCGTAAAGCTACTCTTTTTGTGCATCCTGACAAGCTGCAGCAGCGGGGGGCAAGCATTCAACAAAAGTACATTTGCGAGAAGGTTTTTGATCTTCTAAAGGAAGCTTGGAACAGATTTAACATGGAAGAACGGTGA 3978 0.4198 MEFGAATAAAATLTKKLSNGYGVSGRSAYDGVFAAPIKLRAPGLSSHFDDYREIFGAAGASLGSSIPILEIPDERRRNDEVRRSKLDYAKVFGGFGNLDAAVPFEELIAEPKEKDSFTARSKVKGENQSCRQDHTNCSKEVPVASWSSNHAKRINMSYHKVNQGNEDGTNGTTHIAQLRAIPAYTQLIEEVNPVKMNRKNKSIPEAQDTYSGSHGNEGIEESVNSSKSFAGASPDNSKDQSSNNREKVKRRSDSIDLFFDECEISNGSDGACHVKVPLSETTTGNLNNHHDAMKPMPTKCQASKGVSGADSPSYSDDMVDSNSEVAASVAALRKAIEEAQVRMKVAEELMRRKKEGFPDRVKRKSNIELKAEGKKETKVTYKTMKIEEINAKQTFGEMDGLPNASYEEVKSVMRTEQVRSDLGASETSVAKEAVREAQKKLKSTQAKHKKEFEQKEAYHKGKILELREAENNKKQLYIKNTDMNASDKPEESDHTIEMVKEYWRPENNEDKVRMDIESSACEEPIEETTHRCQEVVDETKLIQESLENGTLDKSLKFNENGEVENKVTPFHEPEDYERNLGGQGSTTVNGEKVACKPEEDSNKFEGSFELEECKTNLRAVQELGEVEKNITQEQKGSVDIVAASSELEECELAEILERINNDNMSSQHGPDLLSKDKDTENLGCIDDRKKKNESGFQDINQETEHSCQREATDNTFSNINVQEMLADVADRIHNEEEIYERNTEESKLDGIGMVLDAQESENEFEGATQLMDENVRERIGNKEPVEAIRVTQSSASSEEVKAEETGKTTETSSGYESDETEKLNITQVADTIIENEVTLEVNPEVHSCYVLDDVMVGSSASFQHQERYEETDPVLQETNDFHDKHAETSEGAATNIGDTDIKDSQNEDQCREKAENDCNLEMLVEDTTPESVEICKDAKETGVASNEAVGENRSNSSNEEKLFDNEHNIDESQIPSTSDWKSSHFKEEEVESSHSNLRESNQASVTMEEKEANDNLHKEELEKEHLKKLDEAKARQREREKEKLAVERAIREARERAFAGARERAALERAAAEARQKNISDGRERLGKTTSQANEKTPAEKAAMEAKLKAERAAVERATAEARARALERALSEKAASDARNKSDKSVAGFGVSRDNVTKQNFHSKSFSYGVRDSSDVFDGADGDSAQRCKARFERHQRIGERVAKALAEKNMRDRLVLKEQEERNRVAEALDADVKRWSSGKTGNLRALLSTLQYILGPDSGWQPIPLTDTVTSTAVKKAYRKATLFVHPDKLQQRGASIQQKYICEKVFDLLKEAWNRFNMEER 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00299 1325 MobiDBLite consensus disorder prediction 196 251 - -
Cca05g00299 1325 Coils Coil 434 454 - -
Cca05g00299 1325 Coils Coil 329 356 - -
Cca05g00299 1325 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 649 - -
Cca05g00299 1325 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 628 889 - -
Cca05g00299 1325 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 887 1325 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 1074 1090 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 943 1043 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 203 239 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 1074 1100 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 118 144 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 662 696 - -
Cca05g00299 1325 Coils Coil 466 486 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 130 144 - -
Cca05g00299 1325 ProSiteProfiles dnaJ domain profile. 1261 1325 IPR001623 -
Cca05g00299 1325 Gene3D DnaJ domain 1197 1325 IPR036869 -
Cca05g00299 1325 Coils Coil 1101 1130 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 791 822 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 1010 1043 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 671 696 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 304 319 - -
Cca05g00299 1325 SUPERFAMILY Chaperone J-domain 1192 1321 IPR036869 -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 888 910 - -
Cca05g00299 1325 PANTHER AUXILIN-LIKE PROTEIN 1 649 - -
Cca05g00299 1325 PANTHER AUXILIN-LIKE PROTEIN 887 1325 - -
Cca05g00299 1325 PANTHER AUXILIN-LIKE PROTEIN 628 889 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 299 319 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 807 822 - -
Cca05g00299 1325 Coils Coil 1009 1049 - -
Cca05g00299 1325 MobiDBLite consensus disorder prediction 981 995 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00299 Cca-Chr5 6274785 6282753 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00299 05 6274785 6282753 Cca05g00299 05 6274785 6282753 ECH
Cca05g00299 05 6274785 6282753 Cca07g00376 07 4886863 4894303 PCT