Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00297 ATGGGAGCAGAACCTTTGTCCAACAACCACACACACCCTCCTCCTCTCGTTCTAGGACTCCAACCCTCAGCCCTTGTCGACCACGTGGCACGCGTTGATTGCTCCTTGCTCCATCAAATTCCCGGTGAACATGGTGGCTCCATACCTGTTGCGCTTGGAGAGCTTGAACATATACTCAGGGAGGTGAAAAACCATGTTATATCGGGCCATGATCTTGATGGTGTTAAGACCTTGGCTGGAGGCAGTGTTGCAAACACAATTCGTGGACTCAGAAGTGGGTTTGGGATTTCTAGTGGAATTATTGGGGCGTGTGGGGATGATGAGCAAGGCAAGTTATTTGTCCATAACATGAACTCCAATGGAGTTGACCTCTCCAGACTCAGGAACAAGAAAGGACATACAGCACAGTGTGTTTGTTTGGTTGACGCTTTCGGAAACCGAACGATGCGACCCTGTCTCTCAAATGCCGTGAAAGTTCAGGCAGAAGAATTGACCAAAAAGGATTTTAAGGGCTCCAAGTGGTTGGTGTTAAGATATGCAATACTCAATTTCGAAGTGATTCAAGCAGCCATTCTTTTAGCAAAACAAGAAGGTCTTCTTGTTTCCTTGGACTTGGCCAGCTTTGAGATGGTTAGGAATTTTAAACAACCACTTCTGAAGCTACTAGAGTCTGGGAACATTGACCTTTGCTTTGCCAATGAGGATGAGGCAACAGAGCTTCTAAGGGGTGGACAGAATGCTGATCCTGAAACTGCCGTAGATTTTCTTGCCAAATATTGTCAATGGGCCGTAGTAACTCTGGGTCCTAATGGATGCATTGCTAAACATGGAAACGAGATTGCACGTGTCCCGGCCATAGGAGAAGCAAAGGCAACTGATGCTACTGGGGCAGGGGATCTTTTTGCAAGTGGGTTTTTGTATGGAGTGATCAAAGGTCTGTCACTTGAAGAGTGCTGCAAAGTGGGCGCATGCAGTGGTGGGTCTGTTGTTCGCTCTCTTGGCGGTGAAGTGACATCAGAGAATCGCCAGTGGATGTACAAACAAATGCAAATAAAGGATCTTCTCACGCCTGATACATCCAAATGA 1086 0.4687 MGAEPLSNNHTHPPPLVLGLQPSALVDHVARVDCSLLHQIPGEHGGSIPVALGELEHILREVKNHVISGHDLDGVKTLAGGSVANTIRGLRSGFGISSGIIGACGDDEQGKLFVHNMNSNGVDLSRLRNKKGHTAQCVCLVDAFGNRTMRPCLSNAVKVQAEELTKKDFKGSKWLVLRYAILNFEVIQAAILLAKQEGLLVSLDLASFEMVRNFKQPLLKLLESGNIDLCFANEDEATELLRGGQNADPETAVDFLAKYCQWAVVTLGPNGCIAKHGNEIARVPAIGEAKATDATGAGDLFASGFLYGVIKGLSLEECCKVGACSGGSVVRSLGGEVTSENRQWMYKQMQIKDLLTPDTSK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00297 361 Pfam pfkB family carbohydrate kinase 70 335 IPR011611 -
Cca05g00297 361 Gene3D - 20 341 IPR029056 -
Cca05g00297 361 PANTHER CARBOHYDRATE KINASE-LIKE 3 352 - -
Cca05g00297 361 SUPERFAMILY Ribokinase-like 23 335 IPR029056 -
Cca05g00297 361 CDD adenosine_kinase 17 334 - -
Cca05g00297 361 PANTHER SUGAR KINASE 3 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00297 Cca-Chr5 6241265 6245065 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00297 05 6241265 6245065 Cca05g00297 05 6241265 6245065 ECH
Cca05g00297 05 6241265 6245065 Cca07g00350 07 4629792 4635380 PCT