Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00295 ATGCCATTCAGGAGCATCGTGCGTGAGCTCAAGGAGATTGGAGAGGGCATCAGCAACATGTATAGAAGAGGGGGAGAGGCCAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAGTGTTCCTTaccactgccactgccactaccaccaccatcatcaccatcttcatcctcattgtcgtcgtcatcatcgCAGAGCCGGTGGGCTAATTTGCCACCTGAGTTGCTATTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACTTCATGGCCTGCACGTAGAGCACTTGTGGCATGTGCCTCAGTTTGTAGGGTGTGGAGAGAGATAACAAAGGATGTGATAAAGACACCAGAAGAGTGTGGTTTGCTCACTTTCCCCATATCACTGAAACAGCCTGGCCCAAGAGACTCTCCAATCCAATGTTTTATTAGGAGAGAAAGAGTGACTTCAACATATTGTTTATATCTCGGTCTGAGCCCAGCTCTTTCTGGTGATATGAGCAAATTGTTACTGGCAGCAAAGAAAATTAGAAGGGCAACATGCACAGAATTTTTTGTATCATTGGTTGCTGATGATTTCTCTCGGGCTAGCAACACTTACATTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTTACGATCATGGATGGCGAGCCCCCGCATGAATCTTCACTTCCATCGAATTGCAAGTTGCAGAAAAGAGTCCATCTGAAGCAGGTACTTCCTAAGGTTGCTGTTGCTAACTACAAAGTGGCCACAGTATCTTACGAACTCAATGTCCTCCGAACAAGAGGTCCGAGGCGAATGCGGTGTATGATGCACTTAATCCCTATATCTTCAATCCAAGAAAGAGGAACTGCCCCTACTCCTTTGAAGTTTACCAATTATCTTAATGATCAAGAATCTACCCCTATCCCAGACTCAAAAGGAAAGAAGCCAGAAGTTGTTGAGTTGGACTCAATTGGCACTGAGAATACTCAAGAATCAACACAGAGAGCAAGTGAACCATTGATTTTGAAAAACAAAGCTCCTAGATGGCATGAACAATTGCAATCTATAGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTATCGATATCCCCTCTCAGCTTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1206 0.4121 MPFRSIVRELKEIGEGISNMYRRGGEAKHVHRHGKSHIAPECSLPLPLPLPPPSSPSSSSLSSSSSQSRWANLPPELLLDIIQRLEASETSWPARRALVACASVCRVWREITKDVIKTPEECGLLTFPISLKQPGPRDSPIQCFIRRERVTSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFFVSLVADDFSRASNTYIGKLRSNFLGTKFTIMDGEPPHESSLPSNCKLQKRVHLKQVLPKVAVANYKVATVSYELNVLRTRGPRRMRCMMHLIPISSIQERGTAPTPLKFTNYLNDQESTPIPDSKGKKPEVVELDSIGTENTQESTQRASEPLILKNKAPRWHEQLQSIEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 401
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00295 401 PANTHER TUBBY-RELATED 1 355 - -
Cca05g00295 401 PANTHER TUBBY-LIKE F-BOX PROTEIN 356 401 - -
Cca05g00295 401 ProSitePatterns Tub family signature 2. 386 401 IPR018066 -
Cca05g00295 401 SUPERFAMILY F-box domain 54 114 IPR036047 GO:0005515
Cca05g00295 401 SUPERFAMILY Tubby C-terminal domain-like 119 401 IPR025659 -
Cca05g00295 401 Gene3D - 63 116 - -
Cca05g00295 401 MobiDBLite consensus disorder prediction 40 67 - -
Cca05g00295 401 PRINTS Tubby superfamily signature 202 226 IPR000007 -
Cca05g00295 401 PRINTS Tubby superfamily signature 251 278 IPR000007 -
Cca05g00295 401 PRINTS Tubby superfamily signature 379 401 IPR000007 -
Cca05g00295 401 PRINTS Tubby superfamily signature 186 202 IPR000007 -
Cca05g00295 401 PRINTS Tubby superfamily signature 358 377 IPR000007 -
Cca05g00295 401 Gene3D Tubby Protein; Chain A 129 401 IPR025659 -
Cca05g00295 401 Pfam Tub family 131 355 IPR000007 -
Cca05g00295 401 Pfam Tub family 357 396 IPR000007 -
Cca05g00295 401 Pfam F-box domain 70 115 IPR001810 GO:0005515
Cca05g00295 401 PANTHER TUBBY-RELATED 356 401 - -
Cca05g00295 401 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 355 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca05g00295 Cca-Chr5 6177405 6180595 Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Cca05g00295 Tub 7.6e-58 CL0395
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00295 05 6177405 6180595 Cca05g00295 05 6177405 6180595 ECH