Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca05g00295 | ATGCCATTCAGGAGCATCGTGCGTGAGCTCAAGGAGATTGGAGAGGGCATCAGCAACATGTATAGAAGAGGGGGAGAGGCCAAGCATGTGCATCGCCATGGAAAATCTCACATTGCACCAGAGTGTTCCTTaccactgccactgccactaccaccaccatcatcaccatcttcatcctcattgtcgtcgtcatcatcgCAGAGCCGGTGGGCTAATTTGCCACCTGAGTTGCTATTAGACATAATTCAAAGGTTGGAAGCCAGTGAAACTTCATGGCCTGCACGTAGAGCACTTGTGGCATGTGCCTCAGTTTGTAGGGTGTGGAGAGAGATAACAAAGGATGTGATAAAGACACCAGAAGAGTGTGGTTTGCTCACTTTCCCCATATCACTGAAACAGCCTGGCCCAAGAGACTCTCCAATCCAATGTTTTATTAGGAGAGAAAGAGTGACTTCAACATATTGTTTATATCTCGGTCTGAGCCCAGCTCTTTCTGGTGATATGAGCAAATTGTTACTGGCAGCAAAGAAAATTAGAAGGGCAACATGCACAGAATTTTTTGTATCATTGGTTGCTGATGATTTCTCTCGGGCTAGCAACACTTACATTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTTACGATCATGGATGGCGAGCCCCCGCATGAATCTTCACTTCCATCGAATTGCAAGTTGCAGAAAAGAGTCCATCTGAAGCAGGTACTTCCTAAGGTTGCTGTTGCTAACTACAAAGTGGCCACAGTATCTTACGAACTCAATGTCCTCCGAACAAGAGGTCCGAGGCGAATGCGGTGTATGATGCACTTAATCCCTATATCTTCAATCCAAGAAAGAGGAACTGCCCCTACTCCTTTGAAGTTTACCAATTATCTTAATGATCAAGAATCTACCCCTATCCCAGACTCAAAAGGAAAGAAGCCAGAAGTTGTTGAGTTGGACTCAATTGGCACTGAGAATACTCAAGAATCAACACAGAGAGCAAGTGAACCATTGATTTTGAAAAACAAAGCTCCTAGATGGCATGAACAATTGCAATCTATAGAACAAGAAAAAGTGATACTACAATTTGGAAAAATTGGGAAGGACATATTCACCATGGATTATCGATATCCCCTCTCAGCTTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA | 1206 | 0.4121 | MPFRSIVRELKEIGEGISNMYRRGGEAKHVHRHGKSHIAPECSLPLPLPLPPPSSPSSSSLSSSSSQSRWANLPPELLLDIIQRLEASETSWPARRALVACASVCRVWREITKDVIKTPEECGLLTFPISLKQPGPRDSPIQCFIRRERVTSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFFVSLVADDFSRASNTYIGKLRSNFLGTKFTIMDGEPPHESSLPSNCKLQKRVHLKQVLPKVAVANYKVATVSYELNVLRTRGPRRMRCMMHLIPISSIQERGTAPTPLKFTNYLNDQESTPIPDSKGKKPEVVELDSIGTENTQESTQRASEPLILKNKAPRWHEQLQSIEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 401 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca05g00295 | 401 | PANTHER | TUBBY-RELATED | 1 | 355 | - | - | |
Cca05g00295 | 401 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 356 | 401 | - | - | |
Cca05g00295 | 401 | ProSitePatterns | Tub family signature 2. | 386 | 401 | IPR018066 | - | |
Cca05g00295 | 401 | SUPERFAMILY | F-box domain | 54 | 114 | IPR036047 | GO:0005515 | |
Cca05g00295 | 401 | SUPERFAMILY | Tubby C-terminal domain-like | 119 | 401 | IPR025659 | - | |
Cca05g00295 | 401 | Gene3D | - | 63 | 116 | - | - | |
Cca05g00295 | 401 | MobiDBLite | consensus disorder prediction | 40 | 67 | - | - | |
Cca05g00295 | 401 | PRINTS | Tubby superfamily signature | 202 | 226 | IPR000007 | - | |
Cca05g00295 | 401 | PRINTS | Tubby superfamily signature | 251 | 278 | IPR000007 | - | |
Cca05g00295 | 401 | PRINTS | Tubby superfamily signature | 379 | 401 | IPR000007 | - | |
Cca05g00295 | 401 | PRINTS | Tubby superfamily signature | 186 | 202 | IPR000007 | - | |
Cca05g00295 | 401 | PRINTS | Tubby superfamily signature | 358 | 377 | IPR000007 | - | |
Cca05g00295 | 401 | Gene3D | Tubby Protein; Chain A | 129 | 401 | IPR025659 | - | |
Cca05g00295 | 401 | Pfam | Tub family | 131 | 355 | IPR000007 | - | |
Cca05g00295 | 401 | Pfam | Tub family | 357 | 396 | IPR000007 | - | |
Cca05g00295 | 401 | Pfam | F-box domain | 70 | 115 | IPR001810 | GO:0005515 | |
Cca05g00295 | 401 | PANTHER | TUBBY-RELATED | 356 | 401 | - | - | |
Cca05g00295 | 401 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 355 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca05g00295 | Cca-Chr5 | 6177405 | 6180595 | Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Cca05g00295 | Tub | 7.6e-58 | CL0395 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca05g00295 | 05 | 6177405 | 6180595 | Cca05g00295 | 05 | 6177405 | 6180595 | ECH |