Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00293 ATGAGTTGGAGAACCTTCGCTTCCACTTCGACTCGCACAATCAAAAAACTCAATGCACTCTTACGATCCCCTCCCCCTCCTCCGCGCCTCccacgcgcctcctctcacgcgccattcgccacgcgccTCCTCCATTCCGCAACACCCACCACCGCCCTCGTCGACCCCAAACGGCGCGCTCCGCGAAacgacggcgccgccgccgccgacgacgacggcgacgacacgacgagcgaGTTTCTCTCGCGTTTCGTGTGGGTAATGCGGAAGAAGGTGAAGGAGGTGCACCCGGACTCCGACAAGGCCACCGTCGACGGCATGCTGGTGGCGATCGTGCAGAGGGTCACGGCGGAGATGGAAAGGGGCGGCGGCGAAACGGCGTCGTTTGGGGATTTCAGCGAGGATTTGTGGAGAACGGTGTGGGAGGTGAGCAACGAGGTGTTGGAGGACATGAACAAGGAGAGGAAGAAGGAGAAGATGAAGGGTTTCTTGCAGTGCGAGGAGGTTAAGGAAATGTGCCGATTCGCCGGAGAAGTTGGCATTCGCGGCGATTTGCTCAGGGAGCTTAGGTTCAAGTGGGCACGTGAGAAAATGGAGGAGCACGAATTCTACGAGGGTTTGGAGAAAATAAGGAAAGAGGCGCAACCTGAGAGTGAGAACAATGAATTTGATGTTAGTGAGGAGAAGGAAAAGGTTGTTGTTGGGCTTCCCAAGAGGAGGGGGAAGATAAGGTACAATATTTATGGGCTTGATCTGTCTGATCCCAAGTGGGCACAGGTGGCTGATAGGATCCATGAGGCAGAGCAAGTGTTTTGGCCTCAGGAGCCGAAGCCAATTACTGGAAAAGCGAAGATCGTTACCACGAAGATTCTGTCGTTGAAGGAGGAAGAGGAGAGTGGTTTGCAAAGCCTGTTGGCTGAGTGGGTGGAGCTTGTGCAACCTAGCAGGGTGGAGTGGATGGATTTGCTTCACAAAATGAAAGAACAGAATCCTGCTTTGTATTTGAAGGTGGCTGAAATGGTATTGACTGAAGATTCTTTCCAAACAAATGTATCTGACTACTTTAGGCTTATTGACATCTATGCTAAAGAGAACTACTTTGATGATGTTGAGAGAATCCTTAAGAAGATGAATGAAAATGGTTTACAACCAGATGCCTCAACAGCCAGTACACTGGTCCACATGTACTGCAAGGGAGGCAATCTTGCACGAGCAAATGAAGCATTTGAAGTTTTGAGGAGCCGGGGCTTCCAACCAGATATACAAGTCTACAACTCAATGATCATGGCCTTTGTAAATAACGGCCAGCCTAAGTTGGGCGAGAAATTGATGAGGGAGATGGAGACGAAAGATATTAAAACCACAAAGGAAATATACATGGCATTGCTCCGTTCTTTTTCTCAACTTGGTGATACTCAAGGAGCCGAAAGAATTTCAACAACTATGCAGTTTGCTGGAATTCAGCAAAGTATGGAGACATGCACTCTGCTTATCGAGGCACATGCACTTGCAGGTGACCCTGATCAGGCAAGAAGCCATTTTGACTACATGATGAAGTTTGGGCATAAGCCTGATGATAGGTGCACTGCTAGCATGATTGCAGCTTATGAGAAGAAAAACTACTTGGACAATGCATTAAATATTCTATTGGAGTTAGAGAAGGATGGGTTTGAGCCTGGGGTTGCCACTTATTCTGTTCTTGTGGACTGGTTGGGTAAGTTGCAGCTTGTTGATGAGGCTGAACAGCTTTTAGGCAAAATAGCTCTGCTGGGTGAGGCTCCCCCCTTCAAGCTTCAAGTGAGTCTATGTGATATGTATGCTAGGGCTAGAAATGAAAAAAAGGCTCTTCAAGCTCTAGGCGTTCTGGAAGCTAGGAAGGATGAATTGGGACCAGCTGAGTTTGAGAGAATTATAAGTGGCCTTATTGATGGTGGGTTTCAGAAGGATGCACAAAGAATATGTCGAATTATGGAGGCACAGGGTTTTGATGCATCAAGGGTTAAGGTTAACCTAATGAAACCTATCTCCAGAGCACCTAGTATGAGATAG 2049 0.4553 MSWRTFASTSTRTIKKLNALLRSPPPPPRLPRASSHAPFATRLLHSATPTTALVDPKRRAPRNDGAAAADDDGDDTTSEFLSRFVWVMRKKVKEVHPDSDKATVDGMLVAIVQRVTAEMERGGGETASFGDFSEDLWRTVWEVSNEVLEDMNKERKKEKMKGFLQCEEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEGLEKIRKEAQPESENNEFDVSEEKEKVVVGLPKRRGKIRYNIYGLDLSDPKWAQVADRIHEAEQVFWPQEPKPITGKAKIVTTKILSLKEEEESGLQSLLAEWVELVQPSRVEWMDLLHKMKEQNPALYLKVAEMVLTEDSFQTNVSDYFRLIDIYAKENYFDDVERILKKMNENGLQPDASTASTLVHMYCKGGNLARANEAFEVLRSRGFQPDIQVYNSMIMAFVNNGQPKLGEKLMREMETKDIKTTKEIYMALLRSFSQLGDTQGAERISTTMQFAGIQQSMETCTLLIEAHALAGDPDQARSHFDYMMKFGHKPDDRCTASMIAAYEKKNYLDNALNILLELEKDGFEPGVATYSVLVDWLGKLQLVDEAEQLLGKIALLGEAPPFKLQVSLCDMYARARNEKKALQALGVLEARKDELGPAEFERIISGLIDGGFQKDAQRICRIMEAQGFDASRVKVNLMKPISRAPSMR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00293 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Cca05g00293 682 Gene3D Tetratricopeptide repeat domain 473 680 IPR011990 GO:0005515
Cca05g00293 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Cca05g00293 682 Pfam PPR repeat 563 587 IPR002885 -
Cca05g00293 682 Pfam PPR repeat 531 557 IPR002885 -
Cca05g00293 682 TIGRFAM PPR: pentatricopeptide repeat domain 493 525 IPR002885 -
Cca05g00293 682 TIGRFAM PPR: pentatricopeptide repeat domain 357 386 IPR002885 -
Cca05g00293 682 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Cca05g00293 682 TIGRFAM PPR: pentatricopeptide repeat domain 423 453 IPR002885 -
Cca05g00293 682 Pfam Pentatricopeptide repeat domain 478 524 IPR002885 -
Cca05g00293 682 Pfam Pentatricopeptide repeat domain 372 434 IPR002885 -
Cca05g00293 682 Gene3D Tetratricopeptide repeat domain 285 435 IPR011990 GO:0005515
Cca05g00293 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Cca05g00293 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Cca05g00293 682 PANTHER OS07G0661900 PROTEIN 28 671 IPR044657 -
Cca05g00293 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Cca05g00293 682 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 28 671 - -
Cca05g00293 682 MobiDBLite consensus disorder prediction 45 76 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00293 05 6169720 6173356 Cca05g00293 05 6169720 6173356 ECH