Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00287 ATGACAGTGACGGTGGGAGTTCAGATCCAGCAACAGCATCAGAGCAGAATGGCCCTCCCTGATTTCCTCCAGAGCGTGAATCTCAAGTACGTCAAATTAGGTTACCACTACCTGATCTCCAACCTCCTAACCCTATTCCTCGCCCCACTCATCCTCGTCGCTCTCATCCAGGTCTCCCAAACCACCGACCTCCACCACCTCTGGCTCCACCTCCAGTACAACCTCCTCACCATCCTCACCTGCTCCGCCGTCCTCGTCTTCGGCGCCACCCTCTACGCCGTCACCCGCCCCCGCCCCGTCTACCTCCTCGACTCCTCCTGCTTCCGCCCCGCCGACCACCTCAAGGCCCCCTTCCAAAGCTTCATGGACCACTCCCGCCTTACAGGCGACTTCGAGGATTCCTCCCTCGATTTCCAGCGCAAGATCCTCGAACGCTCTGGCCTCGGAGAGGAGACCTACGTTCCCGAGGCCATGCACTCTATTCCGCCTCAGCCCTCTATGGCTGCCGCCAGGGCTGAGGCGGAACAAGTAATGTTCGGTGCTCTGGATAATCTCTTCCAGAGCACCGGTCTCAAACCAAAGGATATTGGTATCCTTATTGTGAATTGTAGCTTGTTTAACCCCACGCCTTCTTTGTCTGCCATGATTGTTAATAAGTACAAGCTGAGGGGTAACATTAGGAGCTTTAACCTAGGTGGGATGGGGTGCAGTGCTGGTGTCATTGCTGTTGATCTTGCCAAGGATCTTTTGCAGGTCCATAGGAACACCTATGCTGTGGTTGTTAGCACTGAGAATATTACTCAGAATTGGTACTTTGGTAACAAGAAATCCATGCTCATTCCCAATTGCTTGTTTCGCGTGGGCTGCGCTGCGCTGTTGCTCTCTAATAAGCCCGCCGATCGCCGGCGGGCTAAGTATAGGCTTGTTCATGTGGTGAGGACACACCGGGGCGCCGATGATAAGGCCTTCCGGTGTGTCTACCAGGAGCAGGATGATGCTGGGAAGACGGGGGTGTCTTTGTCTAAGGATCTGATGGCAATTGCTGGGGGAGCGCTCAAGACCAACATCACCACGCTTGGTCCTTTGGTGCTGCCAATTAGTGAGCAGCTTTTGTTTTTCACGACCTTGTTGATGAAGAAGCTGTTCAAGGCTGATGTGAAACCTTATATACCCGATTTCAAGCTTGCTTTTGATCATTTCTGCATCCATGCTGGGGGCAGGGCTGTGATTGATGAGTTGGAGAAGAACCTGCAGCTGCTTCCGGAGCATGTGGAGGCTTCTAGGATGACCCTTCACCGGTTTGGGAACACTTCCTCAAGCTCCATTTGGTATGAGTTGGCTTACATTGAAGCCAAAGGGAGGGTGAAGAAGGGCAACAGGATTTGGCAAATTGCATTTGGAAGTGGTTTCAAATGTAACAGTGCGGTTTGGGAGGCGCTGAGAAATGTCAGGCCTTCTCCTAATGGACCATGGGAAGATTGCATTCATAGGTACCCTGTGGAGATAGTTACATAG 1515 0.5267 MTVTVGVQIQQQHQSRMALPDFLQSVNLKYVKLGYHYLISNLLTLFLAPLILVALIQVSQTTDLHHLWLHLQYNLLTILTCSAVLVFGATLYAVTRPRPVYLLDSSCFRPADHLKAPFQSFMDHSRLTGDFEDSSLDFQRKILERSGLGEETYVPEAMHSIPPQPSMAAARAEAEQVMFGALDNLFQSTGLKPKDIGILIVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDLLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGCAALLLSNKPADRRRAKYRLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFTTLLMKKLFKADVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRVKKGNRIWQIAFGSGFKCNSAVWEALRNVRPSPNGPWEDCIHRYPVEIVT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00287 504 SUPERFAMILY Thiolase-like 86 304 IPR016039 GO:0016746
Cca05g00287 504 Pfam FAE1/Type III polyketide synthase-like protein 92 381 IPR013601 GO:0006633|GO:0016020|GO:0016747
Cca05g00287 504 PANTHER 3-KETOACYL-COA SYNTHASE 4 14 503 - -
Cca05g00287 504 PIRSF Very_long_ch_3-ktacl-CoA_syn 21 504 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca05g00287 504 CDD CHS_like 82 477 - -
Cca05g00287 504 Gene3D - 119 479 IPR016039 GO:0016746
Cca05g00287 504 SUPERFAMILY Thiolase-like 309 478 IPR016039 GO:0016746
Cca05g00287 504 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 397 478 IPR013747 -
Cca05g00287 504 PANTHER 3-KETOACYL-COA SYNTHASE 14 503 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00287 Cca-Chr5 6096839 6099430 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00287 05 6096839 6099430 Cca05g00287 05 6096839 6099430 ECH