Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00285 ATGGCCTCAAGCTCAGCTTGGACATCAAAGCAGAACAAAAAGTTTGAGAATGCTTTGGCCATCTACGACAAGGACACCCCAGATCGGTGGCAGAACTTGGCTAGGGCCGTGGGAGGGAAGACCGTGGAAGAAGTGAAGAGGCACTATGAGATGCTCGTCGATGACTTGAAGCAGATTGAGGAAGGTCACGTCCCCTTGCCCAATTACAGAAACGTTTCTGCAACAGTTGGACCCAACATCAAAGGTTACACTTACATGGACCAAGAACAAAGGTTGAAGGTTCTGAGCCTCCGGTGA 297 0.4983 MASSSAWTSKQNKKFENALAIYDKDTPDRWQNLARAVGGKTVEEVKRHYEMLVDDLKQIEEGHVPLPNYRNVSATVGPNIKGYTYMDQEQRLKVLSLR 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00285 98 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Cca05g00285 98 SUPERFAMILY Homeodomain-like 7 60 IPR009057 -
Cca05g00285 98 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 97 - -
Cca05g00285 98 SMART sant 3 55 IPR001005 -
Cca05g00285 98 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 97 IPR044636 GO:0003700
Cca05g00285 98 CDD SANT 6 53 IPR001005 -
Cca05g00285 98 ProSiteProfiles SANT domain profile. 2 52 IPR017884 -
Cca05g00285 98 Gene3D - 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00285 Cca-Chr5 6068451 6069798 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca05g00285 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00285 05 6068451 6069798 Cca05g00285 05 6068451 6069798 ECH
Cca05g00285 05 6068451 6069798 Cca07g00361 07 4702604 4703202 PCT