Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00282 ATGGGAATGGGAGGAATTGCATTATGTGTGGCTACAACGTTGTTGTTAATGGTTGGGTTAACAATGGGAATGGGTTTGAGTTCAAGAACTGAATGGTTTGCGTTAAGGGAACTTCGGTCGTCGTTGGGGATTAAGGCAAAGTATTGGCCTATAAAAGCCGAACCGTGCCGGAACTGGACCGGGGTTCATTGCCGGAACGGTCGAGTTGTGGGTATAAACGTGTCAGGTTTGAGGAGAACCAGGTTGGGTAGACTTAACCCAAATTTTGAAGTGGGTTCTCTTGTGAATTTGACACTGTTGGAATCGTTTAATGCTTCTAGTTTTACGCTTAATGGGTCTATTCCTGAGCTGTTTGGTGAGAGCCTTGGTGTGTTGCAGGTGCTTGACCTTAGTTTTTGTTCTATAACGGGTTTGATTCCTGATTCAATTGGGAGGTTGAGTGTGTTGAGGGTTTTGTTGCTTTCAGGGAATTTGCTCACTGGTAAAATGCCTTTAACGCTTGGGAACCTCACAGGGCTTTCTGTTCTTAATCTCTCTGGAAACTCTCTTTCAGGGTCCGTGCCAGACTCTGTGTCTAAACTTGTGAACCTCACAAGGCTTGATCTTTCTAATAATTACTTGTCTGGGTTTGTTCCACCTGAACTGGGTGCCCTTTTGAGTCTTCAAAAATTATACCTTTCTGGGAATTCTTTTACTGGGTCGGTTCCCTCCCAACTTGGTAACCTTTCTAAGTTGGTTGAGGTTGATCTTAGTGTAAATTTTCTGTCAGGGTTGTTGCCTGGTAGTTTGCTTTCTTCTGAGCTTGTGGCCCTTGAGGTTCTCATTCTCAGAGGGAATTCCTTTGATGGTGCTCTTCCTGATAATTTGAGGTCAATGCCCAGGTTGCAGTTTCTTGATGTGTCCTCTAACAACCTCACTGGGATGCTGCCGAATTTCCTGAGTTGGAATGTTAGTTCTGCTGGTGCTGTGTTTAATCTGTCAAATAATTTGTTCTATGGACATTTGAATACTTCACTTGACAGGTTTCAAGCAATTGATTTATCAAGTAATTATTTGGAAGGTGAAGTGCAGGATGGTGTTAGTAGTGTTAGTCTAGATAGAAATTGCCTACAGATGATTCCAAACCAAAGGGATTTGGAAGAGTGTATAGAGTTTTATGTTAGGAGAAATTTAACCTTTGCTTTACCAAAATCCAAGTCCGGGAGCCGCAGACGAGTGATATTCATACTGGTAGGAATATTTGGTGGGGTTGGCTTCATTGTGCTGCTGACATTGGTCCTCATGGTGGTTCTGAAACATTGTCACAAAGGTAAAAGCCTGGAAGTTCAAAAGGGGATTAAAGATGGGGGTCCTGTTCAAGAAGGGGAAAGTCCTATACCTCCTCCTACGGATATTTATTTTGTGACTGGTGTGGGAGAAGCATTTAGTTTTGAGCAAATGCTACATTTGACTGGCAATTTTGCTGAAGCAAATGTCATAAAGCATGGTCATTCTGGGGACCTATTCTTGGGAGTCTTGGAAAGTGGAGCAACTGTGGTTGTCAGAAGGGTAGACTTGAGTTTATTTAAGAGAGAATCTTATGTTGTGGAATTGAGACTATTAAGCAAGGTTTCACATGCAAGATTGGTCCCAATCCTGGGTCACTGCTTGGAGAACGAGAATGAGAAATGTATAGTTTACAAGTACATGCCGAATAGAGATTTGGCTACTTCCTTGCACAGAGTCAATGGCTCAGATGGTAAATTACAGTCCCTGGATTGGATCACGAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCCTAGCTTACTTGCATGAGTGCAGCCCTCCCCTTGTCCACAGAGATATCCAAGCTAGCAGTATACTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGTGAGGTTACTGCCCAAGGAGATCTTCAACAAAGAGTCATCTCAAGGGTTTTCGGCAAGCCACCGTAA 1971 0.4297 MGMGGIALCVATTLLLMVGLTMGMGLSSRTEWFALRELRSSLGIKAKYWPIKAEPCRNWTGVHCRNGRVVGINVSGLRRTRLGRLNPNFEVGSLVNLTLLESFNASSFTLNGSIPELFGESLGVLQVLDLSFCSITGLIPDSIGRLSVLRVLLLSGNLLTGKMPLTLGNLTGLSVLNLSGNSLSGSVPDSVSKLVNLTRLDLSNNYLSGFVPPELGALLSLQKLYLSGNSFTGSVPSQLGNLSKLVEVDLSVNFLSGLLPGSLLSSELVALEVLILRGNSFDGALPDNLRSMPRLQFLDVSSNNLTGMLPNFLSWNVSSAGAVFNLSNNLFYGHLNTSLDRFQAIDLSSNYLEGEVQDGVSSVSLDRNCLQMIPNQRDLEECIEFYVRRNLTFALPKSKSGSRRRVIFILVGIFGGVGFIVLLTLVLMVVLKHCHKGKSLEVQKGIKDGGPVQEGESPIPPPTDIYFVTGVGEAFSFEQMLHLTGNFAEANVIKHGHSGDLFLGVLESGATVVVRRVDLSLFKRESYVVELRLLSKVSHARLVPILGHCLENENEKCIVYKYMPNRDLATSLHRVNGSDGKLQSLDWITRLKIAIGAAEGLAYLHECSPPLVHRDIQASSILLDDKFEVRLGSLSEVTAQGDLQQRVISRVFGKPP 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00282 656 SUPERFAMILY L domain-like 55 352 - -
Cca05g00282 656 SMART LRR_typ_2 146 169 IPR003591 -
Cca05g00282 656 SMART LRR_typ_2 170 193 IPR003591 -
Cca05g00282 656 SMART LRR_typ_2 268 291 IPR003591 -
Cca05g00282 656 SMART LRR_typ_2 242 265 IPR003591 -
Cca05g00282 656 SMART LRR_typ_2 292 315 IPR003591 -
Cca05g00282 656 SMART LRR_typ_2 122 145 IPR003591 -
Cca05g00282 656 SMART LRR_typ_2 194 218 IPR003591 -
Cca05g00282 656 Gene3D Phosphorylase Kinase; domain 1 463 562 - -
Cca05g00282 656 PANTHER RECEPTOR-LIKE PROTEIN 55 159 654 - -
Cca05g00282 656 Gene3D Ribonuclease Inhibitor 266 382 IPR032675 -
Cca05g00282 656 Gene3D Ribonuclease Inhibitor 31 187 IPR032675 -
Cca05g00282 656 Gene3D Ribonuclease Inhibitor 188 265 IPR032675 -
Cca05g00282 656 PANTHER RECEPTOR-LIKE PROTEIN 55 26 185 - -
Cca05g00282 656 ProSiteProfiles Protein kinase domain profile. 487 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00282 656 SMART tyrkin_6 487 652 IPR020635 GO:0004713|GO:0006468
Cca05g00282 656 Pfam Leucine rich repeat 125 183 IPR001611 GO:0005515
Cca05g00282 656 Pfam Protein tyrosine and serine/threonine kinase 492 632 IPR001245 GO:0004672|GO:0006468
Cca05g00282 656 SUPERFAMILY Protein kinase-like (PK-like) 463 632 IPR011009 -
Cca05g00282 656 PANTHER BNAA07G03560D PROTEIN 26 185 - -
Cca05g00282 656 Pfam Leucine Rich Repeat 196 217 IPR001611 GO:0005515
Cca05g00282 656 PANTHER BNAA07G03560D PROTEIN 159 654 - -
Cca05g00282 656 Gene3D Transferase(Phosphotransferase) domain 1 563 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00282 Cca-Chr5 6015816 6021230 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Cca05g00282 PK_Tyr_Ser-Thr 1e-15 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00282 05 6015816 6021230 Cca05g00282 05 6015816 6021230 ECH