Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00274 ATGGCCATAGCTCGGTTAGTTCGTCAAGCAAAACGCCCTCACGGCTTGTGGGTAAAGATGACAGCTGTCACCATATTGGGTCTCTGCTTCATCTTTGTGTGGGCAGTGTTttcttcttcttcttcatcctctgtcaccttcCAAAGGGAAAGCTTTGAGGACATTGCAGAGCCCGTGGCCTCTTCTCACAGGCCACAGAAGCCGAGAGATGAATCCAAAAAGGGTGAGGCTGATAAAAAGAGTAATGGGtcttcttcttcttctcactcttctGCCACGCGTCCCCACCCCAAGAAAGAGAAGAAAAAGGTGCACAAGGAGGATAAGGAGAAAGGGAATCATCAAGGGTCAGAGGATCCTCAACCCCAACATGGCCATGaagagaaagaaaaagagaaagacaaggacaaagacaaagagaagggtgaagaggaagtggaggtggagggtgaggaagagaaagtggatcgtgaagtggatgtggatgtggatgtagatggtggCACTAGCAATGATTTAATTGAATCAGTGGATCAGGATTCTGAGATGTTGGAAGATGGGGGAATGGAGGAGTTGAGAAAAACAACCAAGGGAAAGGTTAAAGGGCCCTTGTTTGATCCGAATGCTAGCTATAGATGGAAACTGTGTAGTGTTAGAAGCAAGCATAATTACATTCCCTGCATTGATTTTGAAGTTGGTGGAGGGAAGATACCGAGCTACCGCCACACGGAGAGGAGTTGCCCGAGGACACCCCTTATGTGTTTGGTTCCTCTTCCTCATGAAGGGTATGGATCTCCGCTGCCTTGGCCTGAGAGCAAATTGAAGATATTGTATAAGAATGTTGCACATCCTAAACTGGCTGCATACATAAAAAGGCATAGTTGGTTGATGGAGTCTGGAGAGTATCTTACTTTTCCCCAAAACCAATCTGTGTTCAAGGGAGGGATTCATCATTATCTTGAGTCCATTGAAGAGATGGTACCAGACATTGAATGGGGTAAAAATATTCGTGTTGTTCTGGACATCGGATGTATAGATTCGAGCATTGCAGCTGCTCTCCTTGATAAGGAGGTTATAACATTAACACTTGGCTTGAAGAATGACCTAGTGGACTTGGCACAAGTTGCGCTTGAGCGAGGCTTCCCAGCAGTTATTAGTCCTTTCAGTAGAAGGAGGCTTCCTTTTCCAAGCCAAGTTTTTGATGCTATACATTGTGGGGGTTGCAGCATACCTTGGCATTCCAATGGTGGTAAGCTTCTATTAGAGATGAATCGGATTCTACGACCAGGGGGTTACTTTATTATGTCAACTAAACATGACAGCATTGAAGAAGAAGAAGCCATGACATCATTGACGGCATCTATTTGTTGGAATGTTCTGGCACACAAAAGTGATGATGTTGGCGAAGTTGGAGTTAAAATATATCAAAAGCCTGAAGGAAATGACATTTATGAATTGAGAAGGAAGAAGATTCCACCACTTTGCAAAGAAAATGAAAATCCTGATGCAGTCTGGTATGTTCCCATGAAGACTTGTTTGCACACCATTCCATTAGGAATTGAACAACACGGGGCAGAGTGGCCTGAGGAATGGCCCAAAAGGCTCGAAACTTATCCTGATTGGGTGAACAACAAAGAGAAAGTGGTTGCAGACACCAACCACTGGAATGCTATTGTTAACAAGTCATATCTTAATGGACTGGGCATTAATTGGACAAGTATCCGGAATGTAATGGACATGAAATCCATCTACGGCGGATTGGCTGCAGCTCTCTCTCAACAAAAGGTCTGGGTGATGAATGTTGTACCTGTTCATGCACCGGATACGCTTCCCATCATTTTTGAACGTGGGCTTATCGGTATATATCATGATTGGTGCGAGTCATTTGGCACTTATCCAAGAACATATGACCTTTTGCACGCTGATCATTTGTTCTCTCGGCTCAAAAACAGGTGCAAGCAGCCTGTGACCATTGTTGTTGAGATGGACCGTATATTACGACCGGGAGGTTGGACAATTATACGTGACAAAGTTGAGATTCTAAATCCGTTGGAGGAAATATTGAGAAGCATGCAGTGGGAGATTAGGATGACTTTTGCTCAAGATAAGGAGGGTATTCTATGTGCACAGAAAACTACTTACTATTACTATTTACcacactctctcacacacacgcacacacgtacacaATCTCCATTTTCAACTGCAACAATGTCGATATCAACGTCACTATCCTCAGTCCCCGCTCGTCTCACACTCCTCGCTCTCTTCTCCGCCACCACCTTCTACTGCCTCTACAAATCTCGCCGCCTCAGACTCCTTAAACACAAACTCTaccccaaccctaaccctaaccctaaccctaaGATCCTCTTTCTCTCCGAAACCGGCACCGCCAAATCCCTCGCCCGCCGCCTCCACCGCCTCCTCGCCTCCAACGGCGTCGCATTCGACGTCGTTGATTGCCAACACTACGAGCCCGAGGACCTCCCCAAGGAAACGCTCATCCTCCTCGTCGCCTCCACCCGCTCCTACGGCGACTCCTTCAACGCCGTCGCCAGAGGGCTCGCCAAGCACCTGAGGGCCCTCGGCGCTGCTGAGGTGGTTCCGCTTTGCGAAGGCGACGTCGACGGTGGTGACGTGGACGCGGTTTTCGATCGGTGGTGTGCCAAGGTGGTTGAGGTTTTGAAAGGCGGTGGTGGTGATGATGTTGCCGCCGTGGAATATGGCGACGTTTCGAGTTCCGAGGAGGATTCTGATGGGGAGAGTGAGATCGTTGATCTTGAGGACATTGCTGGTAAAGCTCCTTCGCGGAAGTCGGTGGCTAATGGGGAGGAGAGTAATGGGAAATTGAATGGGAAAAAAGAAATGGTGACTCCGGTGATTCGAGCAAATTTACAGAAGCAGGGGTATAAAATTATTGGATCGCATAGTGGTGTCAAGCTTTGTAGATGGACCAAGGCGCAGCTTCGAGGGCGAGGTGGTTGTTATAAGCACTCGTTTTATGGAATTGAGAGCCACAGATGCATGGAGGCAACCCCTAGTTTGGCATGCGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGGGAAAAGTTGGCAGTGGGAGATGGATGATCCAATAGAGATTATAAATACTGCAATAGACCTGCATACAAATATGATTAAACAGATGAAAGGAGTTCCTGGAGTCACCTTGGAGCGATTAAATGAAGGTCTCTCACCACGTCATTGTGCATTATCTCTTGTTGGTGAACCTATTATGTATCCAGAGATAAATGCACTTGTGGATGAACTGCACAAAAGGAGAATTTCCACTTTTCTGGTTACAAATGCACAATTTCCAGATAAAATTAAGTCACTGAAACCCATCACCCAGTTATATGTCAGTGTAGATGCTGCAACAAAGGACTCTTTGAAGGCCATTGATAGACCACTCTTTGGAGATTTCTGGGAGCGATTCATTGATTCCTTGACTGCTCTAAAGCAAAAACATCAGCGAACTGTATACCGCTTGACCCTGGTGAAAGGTTGGAATACTGAAGATATTGATGCTTATTCTAAGCTCTTTAGTATAGGAGAACCTGACTTTGTTGAAATCAAGGGAGTTACGTATTGTGGCTCGTCCACTACATCAAAATTGACAATGGAAAATGTCCCTTGGCATACTGATGTCAAAGCTTTCTCTGAGGCCCTAGCTTTAAAAAGTCAAGGAGAGTATGAAGTTGCATGTGAGCATGAGCACTCGTGTTGCGTCCTCTTAGCAAAATCTAATAAGTTCAAAATTGATGGCCAGTGGTATACCTGGATAGACTATGAAAAATTTCATGATCTGGTGGCATCTGGAAGAACATTTGACAGCAGAAATTACATGAGTGCCACACCATCCTGGGCCGTCTATGGATCAGAGGAAAGTGGATTTGATCCAGGACAATTGAGATACAGGAAAGAGAGACATCACAAGTCTAGCCGCAATCAATCAGGATTATGTGCAGGATTCATGTGGTCTATGTCAAAACTTCCGAGAACGAAATATGGTACTGTGTACAAACTGCAAGGAACACCGTTTCTAGGTCCCCCACAAAGTTATTTAAACCGATAG 4113 0.4291 MAIARLVRQAKRPHGLWVKMTAVTILGLCFIFVWAVFSSSSSSSVTFQRESFEDIAEPVASSHRPQKPRDESKKGEADKKSNGSSSSSHSSATRPHPKKEKKKVHKEDKEKGNHQGSEDPQPQHGHEEKEKEKDKDKDKEKGEEEVEVEGEEEKVDREVDVDVDVDGGTSNDLIESVDQDSEMLEDGGMEELRKTTKGKVKGPLFDPNASYRWKLCSVRSKHNYIPCIDFEVGGGKIPSYRHTERSCPRTPLMCLVPLPHEGYGSPLPWPESKLKILYKNVAHPKLAAYIKRHSWLMESGEYLTFPQNQSVFKGGIHHYLESIEEMVPDIEWGKNIRVVLDIGCIDSSIAAALLDKEVITLTLGLKNDLVDLAQVALERGFPAVISPFSRRRLPFPSQVFDAIHCGGCSIPWHSNGGKLLLEMNRILRPGGYFIMSTKHDSIEEEEAMTSLTASICWNVLAHKSDDVGEVGVKIYQKPEGNDIYELRRKKIPPLCKENENPDAVWYVPMKTCLHTIPLGIEQHGAEWPEEWPKRLETYPDWVNNKEKVVADTNHWNAIVNKSYLNGLGINWTSIRNVMDMKSIYGGLAAALSQQKVWVMNVVPVHAPDTLPIIFERGLIGIYHDWCESFGTYPRTYDLLHADHLFSRLKNRCKQPVTIVVEMDRILRPGGWTIIRDKVEILNPLEEILRSMQWEIRMTFAQDKEGILCAQKTTYYYYLPHSLTHTHTRTQSPFSTATMSISTSLSSVPARLTLLALFSATTFYCLYKSRRLRLLKHKLYPNPNPNPNPKILFLSETGTAKSLARRLHRLLASNGVAFDVVDCQHYEPEDLPKETLILLVASTRSYGDSFNAVARGLAKHLRALGAAEVVPLCEGDVDGGDVDAVFDRWCAKVVEVLKGGGGDDVAAVEYGDVSSSEEDSDGESEIVDLEDIAGKAPSRKSVANGEESNGKLNGKKEMVTPVIRANLQKQGYKIIGSHSGVKLCRWTKAQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWEMDDPIEIINTAIDLHTNMIKQMKGVPGVTLERLNEGLSPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPDKIKSLKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFIDSLTALKQKHQRTVYRLTLVKGWNTEDIDAYSKLFSIGEPDFVEIKGVTYCGSSTTSKLTMENVPWHTDVKAFSEALALKSQGEYEVACEHEHSCCVLLAKSNKFKIDGQWYTWIDYEKFHDLVASGRTFDSRNYMSATPSWAVYGSEESGFDPGQLRYRKERHHKSSRNQSGLCAGFMWSMSKLPRTKYGTVYKLQGTPFLGPPQSYLNR 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00274 1370 MobiDBLite consensus disorder prediction 56 173 - -
Cca05g00274 1370 Pfam Flavodoxin 790 847 IPR008254 GO:0010181
Cca05g00274 1370 SFLD tRNA wybutosine-synthesizing 953 1264 IPR034556 GO:0008033|GO:0051539
Cca05g00274 1370 PANTHER METHYLTRANSFERASE PMT28-RELATED 8 714 - -
Cca05g00274 1370 MobiDBLite consensus disorder prediction 145 159 - -
Cca05g00274 1370 SFLD tRNA wybutosine-synthesizing 953 1264 - -
Cca05g00274 1370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 567 701 IPR029063 -
Cca05g00274 1370 CDD Radical_SAM 1014 1194 - -
Cca05g00274 1370 CDD AdoMet_MTases 339 436 - -
Cca05g00274 1370 Pfam Radical SAM superfamily 1014 1192 IPR007197 GO:0003824|GO:0051536
Cca05g00274 1370 Pfam Wyosine base formation 1197 1260 IPR013917 -
Cca05g00274 1370 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 223 711 IPR004159 GO:0008168
Cca05g00274 1370 Gene3D Aldolase class I 942 1272 IPR013785 -
Cca05g00274 1370 Gene3D - 846 899 IPR029039 -
Cca05g00274 1370 ProSiteProfiles Flavodoxin-like domain profile. 788 936 IPR008254 GO:0010181
Cca05g00274 1370 Gene3D Vaccinia Virus protein VP39 314 484 IPR029063 -
Cca05g00274 1370 MobiDBLite consensus disorder prediction 103 144 - -
Cca05g00274 1370 SUPERFAMILY Flavoproteins 787 896 IPR029039 -
Cca05g00274 1370 ProSiteProfiles Radical SAM core domain profile. 1002 1245 IPR007197 GO:0003824|GO:0051536
Cca05g00274 1370 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 8 714 IPR004159 GO:0008168
Cca05g00274 1370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 261 441 IPR029063 -
Cca05g00274 1370 SUPERFAMILY Radical SAM enzymes 1015 1194 - -
Cca05g00274 1370 MobiDBLite consensus disorder prediction 63 80 - -
Cca05g00274 1370 Gene3D - 769 845 IPR029039 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00274 Cca-Chr5 5826361 5843930 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00274 05 5826361 5843930 Cca05g00274 05 5826361 5843930 ECH