Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00267 ATGGCTGAGCACCGCGCCGCCTCCGACACTCGCCACCACCTCTCCGTCGCACCGCCATTGCAGATCTCCAAAGATGTCCAAGGATCTGACATTCCCATTCCGCTCTCACCACAGTGGCTTCTGCCAAAGCCTGGGGAGAGTAAAGCTGGAACAGGATCTGTGGAGAACCACATGGTCACAAATCCACCTTATGGCCATCGTGCAGAGACTGTCAAGACATCTGGAAATGGAGAGGATGTGCATGATGCTCACAAGAAAAAGGATGTCTTTAGGCCATCCATGTTTGACTCAGAAAGTGGACGTCGTGACCGCTGGCGTGATGAGGAGAGAGACACTAAGTCTTCCGTACGGAAGGATCGTTGGAGGGATGGGGACAAAGACCTAGGCGATTCTCGCAGAGTGGATCGATGGACAGATAATATGCCTGCAAGGAACTTTGTGGAACCACGCCGTGGTACTCCTGATAATCATAGATGGAATGATTCAGGAAACCGAGAAACTAACTTTGATCAGCGGCGTGAGAGTAAGTGGAACACACGCTGGGGTCCTGATGACAAGGAGCCAGAAGGCGTTCGGGAAAAATGGAGTGACTCCGGAAAAGATGGTGATATACATTTGGAGAAAGGTTTGTCCCACATTTCGAATCATGGAAAGGATGAGAAGGAGGGAGATCATTATCGGCCATGGAGGCCTAACTACTCACAAAGCCGTGGAAGGGTAGACCCTTCCCATACAACGCCAAACAAGCCAGTCTCTACATTTTCCTATGGGCGTGGCCGTGGGGAGAATACACCCCCAGTGTCTAGTCTTGGACATGGTCGGGCTGGTTCTTTTGGTAGCTCTTTGAGCAACACATACCCTGGAACTGCATTGGACAAAGTCGAAAGTGGGCATGAAGAACCTTGCCCCTTTAGATATAATAGGACAAAATTGCTTGATGTGTACAGAGTGACTGGTATGGGTACAAATAGAAAACTAGTTGATGATTTTGTGCAGGTACCTAATCTTACTCAGGATGAACCGTTGGAGCCTCTAGCTCTTTTGGCCCCTAATTCTGAGGAACTGACTGTCTTTAAGGGTATTGACAAAGGGGAGATAATTAGCAGCAGTGCACCTCAGGTGCCAAAAGATGGAAGGAGCTCAACAGATTTTACTCATACAAGGCGAATGAAGCCTGGAAGTGCACCTTTCCAAGATAGAGGTGAAGATGGAGGTTCTTACAAAATACCTGATGAGGTGTCCAGTAACAGAGATTCATCCTTCGAAGGAAATAGTTCTGCTCATCCTGGTGCTCCATGGCGAACAATGCCGTTGGTGGAACATGCTACCACCCCGTTTCATGATAATAGAGACGTAACTAGTGAAGTTAGATTAAGAAAAACAGATCTAAGCTCACACCAACCAAAAGATCCTCATAACCAGTGGGGAAATAATTTGGGTTATTTATCTGACTCCAAAGAAGTTGGAAAGTGGCAAGCTAGTGAGGATCCTCTTATTAAGAGGCAGTTATCTGGCATTTTGGACAGTGAACTTGAAGCCAGGAGAGTTCCACAGATTGCCCCAGAGGAATTATCCCTTTTCTATAAAGATCCTAAGGGTTTAATCCAAGGTCCATTTAAAGGAATTGATATTATTGGATGGTTTGAGGCTGGATATTTTGGTATAGATTTACCTGTTCGTCTGGAAAATTCAGCGGCTGACTCACCATGGTTGTCTCTTGGTGATGTCATGCCCCATTTACGGGCTAAAGCCCGACCACCACCTGGGTTTTCTGCACCAAAACCGAATGACTTTACAGATATTCCTGGCCGGCCAATTCCCAGTACATTTGGGAATACTCTTGCTGGTTTGAATGAGGTTGACATATTGAGAAATGATTCTAGGCTTAGACAGAATTCTGATACCGAAGCTGAAAATAGGTTTCTGGAGTCACTCATGTCTGGTAACAAGAACAGTCCTCCCCTTGACAGCCTGACATTTTCAGAAGGTTTACAAGGGTTTGTTGGAAATAATCCTGGTAGTATGGGCCAATCAGGAGTTGATAGTGGAAATAATCTTTACTTGCTTGCTAAGAGGATGGCTCTTGAACGACAGAGGTCCTTACCCAATCCTTACCCATATTGGCCAGGGCATGAACCAACTTCCTTTGCTCCAAAATCGGATGGTGTCCCAGATGCATCATTGCATTCAAAACTGTTGTCGTCTGTGAGTGATAACTCCCGTCAACCTCAGTCCCAAAATTCTGAGTTAATGTCAATCATCCAAGGATTGTCCGAAAGGGCATCTGCAGGCTTAAATAATGGTGCTCCTGGATGGCCAAATTATCCCTTACAAGGTGCATTGGATCCCCTACAGAATAAAATTGACTTACTTCATGATCAGAATTTTCCTCAAATGCCGTTTGGAATTCAACAACAAAGGCTACCAACACAAAACCAATTGTCTTTAAGCAATTTACTGGCTCAAGCTGCTGATAATCCATCTAACGCTTTGACAGCGGAGAAGCTTCTTTCTTCAGGATTAACACAAGATCCACAAATTTTAAATATGTTGCAACAGCAATATTTGTTGCAACTGCATTCTCAAGCAGCTGCTCAAGCACAGATTGATAAACTCCTGTTGCTGAAAcagcaacagaagcaggaggagcagcagcagctactgcgacaacagcaacaACTGCTTTCTCAAGTGTTGCAAGATCAACAGACTAGCCAGCTTTTTAGCAATTCATCTTATGGACAGTTGCAAGGTGGATTAACCATGGGGAATTTGCGTGTGGATCCTTCTCAAATTCAATCAAAACAAGAGATCTATCCCATGAGCTCTCAGGCACCAATTCCTGGTATGCATAATGAGCATAGTTCTAATTCTTTGAATTTACCTCTGAAAGTTAGTCAAGACACGAGTTCTAACGTAAGCAGTGAAGCTTCTATACATCTGCCACACCAATTATTTGGTGAAACTGGTCGTCCAGAAAGTTGGGGCCCTAATCTTACTGAACAAGTGAATGAACAGTATCAGAAGGAAATGCTCCCCACATCAACTGTTGTTGAGAGTTCTTCATTGCTTGATCAGAACAGATCCAAAGAGGAACAACACATTGTGCTGAAACCTCTCTCTGTTTCTGACTACACTGCTAAGTCAGTGGAGCAGGTACCACCCAGCAATTTTAGGCCTGTTGGTGATGTCATGACCTCAACTTCTAAGTCAGGTGAGGATTCTGGACATATAGAGGTTGTTGCACCTGCTGTTGCCTTGTCTTCAGCTGGATCTATTGGAGTTGAGTTACCACCAGCAAGTGATCATGGTATGGAGGTGAAAATCAAATCAGATAATGTGCATCAAGAGCAGCATGCTGGAAGAGACAGCTCGATATCCGAGCTATCTGTGGGAGATGTACGAAATGTTGAAGCTCATGAACCCAAAAAGGCTTCTGAGAAGAAATCTAAGAAGCAAAAATCAACCAAATCTCAGTCTTCAGATCAATCTAAGGGAGTGCTTAAAACTGTGATTTTGCAGCCATCGAAGCAGTCAGAAGCTGAAATACCAAATTTAAATGAGTTGGGGGAAGTCAACAGGGGCGAATCAGTATATGAAACAAATATTCAACAGACAAGAGTTAAGGGAACTCAGGTTGGAGGTGCTATCCTAGAGGCAGGTGATCACCAACAAGCTAGTGGCTTGCCTGCTGTTGTTACTGAAATCATCTCTGAAACAGTTGATGTGGGTGAGGTGGCCAAGGCAGTTAGTTCTGCTTCGACACAGAAAACTGAAGTATCTGCAGGACGAGCTTGGAAACCTGCTCCAGGTGTCAAACCAAAGTCTTTCTTAGAAATTCAACAAGAAGAACAGAGAAAGGCCAAGACAGAAATGCTTGTATCTGATATTTCTGCTTCTGTCAATTCGATGAGTCTGGTAACACCCTGGGCTGGGGTTGTGGCCAATCCAGACTCTGTGAATGCATCTAGTGAAAGTCACCGAGAAGCAGGCAATACAGAATATCCTGTTAAATCTGAAACTTCTCAAAATCCCAAGAGCAAGAAAAGTCCACTACATGATCTGTTAGCAGAAGAAGTTCTAAAGAAATCTAATGAAATAGATGCTGAGGTTCCAGATAGTATATTGCCCTCACATGTTGTAGCTGTGCATTCAGAACCACTGGATGATGGCAATTTTATCGAGGCAAAAGATACTAAAAGAAGCCGAAAAAAGTCTGGAAAATCAAAGGGTTCGGGAACTAAAGCTTCATTGCCCATTGCGTCTTCTGAGATTCCTATTGCCTCTAGCCCCATTGAGAAGGGTAAAAACTCCCGTTTGGCACAACAGGAGAAAGAAGAATTGCCTGCTATCCCTGTAGGACCTTCTCTTGGAGATTTTGTTCTTTGGAAAGGAGAGCGTGAACCACCAAATCCAACTCCTTCTCCAGCCTGGTCCACTGATTCTGGTAGGGTTCCAAAACCAACTTCATTAAGGGATATTCTGAAGGAGCAGCAGAGAAGAACTTCTGCGATTCCTGTGAGCCCAATGCCTCCCGCTCAGAAATCTCAGCCTACCAGTACCCAGTCTACAAGAAGTAGTGCTTCTTCATGGTCAATTTCAGCATCCTCTCCTTCTAAAGCCGCCTCTCCAATTCAGATAAATTCCCAAGCTTCACAATCAAAATACAAAGGGGACGATGACTTGTTTTGGGGTCCAATAGAGCAATCTAAGCAAGATACTAAGCACAGGTCAGATTTCCCTCAGCTTGTGAGCCAAGGTGGCTGGAGTTCGAAAAATGTACCCATGAAAGGTAATTCTCCCGGATTATTGACACGGCAAAAATCAGCGAGTGGCAAACCAACTGAACGATCTATAGCATCATCGCCTGCCTCTTCTCAATCAGTGCTGAAATTGAAAAAAGATGCCATGACAAGGCATTCTGAGGCTACGGACTTCAGAGATTGGTGTGAGAATGAGTGTGTTAGGCTTATTGGGACAAATGATACAAGTTTCCTTGAATTTTGCTTGAAGCAATCCAGATCAGAAGCTGAGATGCTTCTTATAGAAAACCTTGGATCATATGATCCAGATCATGAATTCATTGATAAATTCCTCAATTACAAGGAGTTGTTACCATCAGATGTTTTGGACATAGCTTTTCAGAGTAGGAATGATAAGAAAGTTGGTGGACATGGTGCGGCAGGCACAGCTTCTGCTAATGCGGACATGCAGGATGCAGACTACACTGAAGGATCCTCTAAAGGAGGTGGAAAGAAGAAAGGTAAAAAGGGGAAAAAGGTCAGCCCTTCAGTTTTGGGATTTAACGTTGTGAGTAACCGGATCATGATGGGTGAGATCCAGTCTGTAGAAGATTAA 5358 0.4382 MAEHRAASDTRHHLSVAPPLQISKDVQGSDIPIPLSPQWLLPKPGESKAGTGSVENHMVTNPPYGHRAETVKTSGNGEDVHDAHKKKDVFRPSMFDSESGRRDRWRDEERDTKSSVRKDRWRDGDKDLGDSRRVDRWTDNMPARNFVEPRRGTPDNHRWNDSGNRETNFDQRRESKWNTRWGPDDKEPEGVREKWSDSGKDGDIHLEKGLSHISNHGKDEKEGDHYRPWRPNYSQSRGRVDPSHTTPNKPVSTFSYGRGRGENTPPVSSLGHGRAGSFGSSLSNTYPGTALDKVESGHEEPCPFRYNRTKLLDVYRVTGMGTNRKLVDDFVQVPNLTQDEPLEPLALLAPNSEELTVFKGIDKGEIISSSAPQVPKDGRSSTDFTHTRRMKPGSAPFQDRGEDGGSYKIPDEVSSNRDSSFEGNSSAHPGAPWRTMPLVEHATTPFHDNRDVTSEVRLRKTDLSSHQPKDPHNQWGNNLGYLSDSKEVGKWQASEDPLIKRQLSGILDSELEARRVPQIAPEELSLFYKDPKGLIQGPFKGIDIIGWFEAGYFGIDLPVRLENSAADSPWLSLGDVMPHLRAKARPPPGFSAPKPNDFTDIPGRPIPSTFGNTLAGLNEVDILRNDSRLRQNSDTEAENRFLESLMSGNKNSPPLDSLTFSEGLQGFVGNNPGSMGQSGVDSGNNLYLLAKRMALERQRSLPNPYPYWPGHEPTSFAPKSDGVPDASLHSKLLSSVSDNSRQPQSQNSELMSIIQGLSERASAGLNNGAPGWPNYPLQGALDPLQNKIDLLHDQNFPQMPFGIQQQRLPTQNQLSLSNLLAQAADNPSNALTAEKLLSSGLTQDPQILNMLQQQYLLQLHSQAAAQAQIDKLLLLKQQQKQEEQQQLLRQQQQLLSQVLQDQQTSQLFSNSSYGQLQGGLTMGNLRVDPSQIQSKQEIYPMSSQAPIPGMHNEHSSNSLNLPLKVSQDTSSNVSSEASIHLPHQLFGETGRPESWGPNLTEQVNEQYQKEMLPTSTVVESSSLLDQNRSKEEQHIVLKPLSVSDYTAKSVEQVPPSNFRPVGDVMTSTSKSGEDSGHIEVVAPAVALSSAGSIGVELPPASDHGMEVKIKSDNVHQEQHAGRDSSISELSVGDVRNVEAHEPKKASEKKSKKQKSTKSQSSDQSKGVLKTVILQPSKQSEAEIPNLNELGEVNRGESVYETNIQQTRVKGTQVGGAILEAGDHQQASGLPAVVTEIISETVDVGEVAKAVSSASTQKTEVSAGRAWKPAPGVKPKSFLEIQQEEQRKAKTEMLVSDISASVNSMSLVTPWAGVVANPDSVNASSESHREAGNTEYPVKSETSQNPKSKKSPLHDLLAEEVLKKSNEIDAEVPDSILPSHVVAVHSEPLDDGNFIEAKDTKRSRKKSGKSKGSGTKASLPIASSEIPIASSPIEKGKNSRLAQQEKEELPAIPVGPSLGDFVLWKGEREPPNPTPSPAWSTDSGRVPKPTSLRDILKEQQRRTSAIPVSPMPPAQKSQPTSTQSTRSSASSWSISASSPSKAASPIQINSQASQSKYKGDDDLFWGPIEQSKQDTKHRSDFPQLVSQGGWSSKNVPMKGNSPGLLTRQKSASGKPTERSIASSPASSQSVLKLKKDAMTRHSEATDFRDWCENECVRLIGTNDTSFLEFCLKQSRSEAEMLLIENLGSYDPDHEFIDKFLNYKELLPSDVLDIAFQSRNDKKVGGHGAAGTASANADMQDADYTEGSSKGGGKKKGKKGKKVSPSVLGFNVVSNRIMMGEIQSVED 1785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00267 1785 MobiDBLite consensus disorder prediction 1738 1762 - -
Cca05g00267 1785 Coils Coil 862 897 - -
Cca05g00267 1785 MobiDBLite consensus disorder prediction 1392 1627 - -
Cca05g00267 1785 MobiDBLite consensus disorder prediction 1561 1578 - -
Cca05g00267 1785 MobiDBLite consensus disorder prediction 1134 1158 - -
Cca05g00267 1785 CDD GYF 523 580 IPR003169 GO:0005515
Cca05g00267 1785 MobiDBLite consensus disorder prediction 1319 1349 - -
Cca05g00267 1785 Pfam GYF domain 527 572 IPR003169 GO:0005515
Cca05g00267 1785 MobiDBLite consensus disorder prediction 1579 1627 - -
Cca05g00267 1785 SMART gyf_5 524 579 IPR003169 GO:0005515
Cca05g00267 1785 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1785 - -
Cca05g00267 1785 MobiDBLite consensus disorder prediction 72 139 - -
Cca05g00267 1785 MobiDBLite consensus disorder prediction 1113 1168 - -
Cca05g00267 1785 ProSiteProfiles GYF domain profile. 523 574 IPR003169 GO:0005515
Cca05g00267 1785 MobiDBLite consensus disorder prediction 236 259 - -
Cca05g00267 1785 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1785 - -
Cca05g00267 1785 SUPERFAMILY GYF domain 515 580 IPR035445 -
Cca05g00267 1785 MobiDBLite consensus disorder prediction 1514 1556 - -
Cca05g00267 1785 MobiDBLite consensus disorder prediction 1 281 - -
Cca05g00267 1785 MobiDBLite consensus disorder prediction 1319 1352 - -
Cca05g00267 1785 Gene3D - 512 589 IPR035445 -
Cca05g00267 1785 MobiDBLite consensus disorder prediction 1053 1076 - -
Cca05g00267 1785 MobiDBLite consensus disorder prediction 368 434 - -
Cca05g00267 1785 MobiDBLite consensus disorder prediction 150 228 - -
Cca05g00267 1785 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00267 Cca-Chr5 5626064 5634469 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00267 05 5626064 5634469 Cca05g00267 05 5626064 5634469 ECH
Cca05g00267 05 5626064 5634469 Cca07g00369 07 4788401 4797289 PCT