Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00258 ATGAAATTGAAGTCTAAGAAAGGATGGAAATCTATTGTACCTCTACATTTGAAAGGAAAATCAGCAACCCGTTTTTCTTTATTTCGCAAAGTCAATTCAGCTGGCTATGGACCTGGGAAAACACCAGTTTATCTGAATGTGTATGACTTAACACCCATGAATGGTTATGTCTATTGGGCTGGTCTTGGTATCTATCACTCTGGTGTAGAAGTTCATGGTGTAGAATACGCGTTTGGAGCTCATGACTACCCAACGAGTGGTGTTTTTGAGGTTGAACCTCGACAGTGTCCAGGCTTCAAATTCAGGAAGTCAATATTCATAGGAACCACATCTTTGGATTCGAGTCAGGTTAGGGAGTTCATGGAACGCCAGTCAGCAGGCTATAATGGTGACACATATCACTTAATTGTTAAGAACTGCAACCACTTCTGCAAAGACATATGTTACAAGCTTACGGGGAAATCAATTCCAACATGGGTAAATCGACTGGCCAGGCTAGGTTCAATTTGCAACTGCATTCTTCCCGAAGCACTAAGGATTTCTGCTGTGGGGCATGATCCTAATTATCAGCCTCGTGATAGTGAAAAGAGAAGGCTTCGAAGTGGCTTCAATTGCTTGTCCTCAATCTCAATGCGACAAAAGCACCTCTCCACATCTTCACTGTTTCTACAGTCACCCTTAAGAGGCTGCTTGTCATCATCGTGGCCCTCGTGGGAATTGAGAAAATCCATGAATCGTTCCATGAAAGAAAGGTAA 756 0.4272 MKLKSKKGWKSIVPLHLKGKSATRFSLFRKVNSAGYGPGKTPVYLNVYDLTPMNGYVYWAGLGIYHSGVEVHGVEYAFGAHDYPTSGVFEVEPRQCPGFKFRKSIFIGTTSLDSSQVREFMERQSAGYNGDTYHLIVKNCNHFCKDICYKLTGKSIPTWVNRLARLGSICNCILPEALRISAVGHDPNYQPRDSEKRRLRSGFNCLSSISMRQKHLSTSSLFLQSPLRGCLSSSWPSWELRKSMNRSMKER 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00258 251 Gene3D PPPDE domains 37 185 IPR042266 -
Cca05g00258 251 SMART DUF862_2a 41 179 IPR008580 GO:0008233
Cca05g00258 251 Pfam PPPDE putative peptidase domain 42 176 IPR008580 GO:0008233
Cca05g00258 251 ProSiteProfiles PPPDE domain profile. 41 178 IPR008580 GO:0008233
Cca05g00258 251 PANTHER DESUMOYLATING ISOPEPTIDASE 2 251 IPR008580 GO:0008233
Cca05g00258 251 PANTHER DESI-LIKE PROTEIN 2 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00258 Cca-Chr5 5520018 5523918 Transposed