Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00256 ATGGTGAGAAATAAAATGCCATCGAATTACTTTTCAAGGCTCGGAGCTTCGATTAAGAGATCGGTGGTGGGGAAAGAGGCTGCTGAAGTTCTCATAGCGCAAGGGAAGTTTTCTAGGTTTTTTCATTCTTTGCATAGCTCATATTGTGTTGAATTAGGTGGCAAAAGAAGAACACTATCGGTAGTTGACACGCTGTCCCGAACGTTTTCGGTCCCTTCGATTCAGGTCTGTGGATACCACATTGGTGGTACCCTTGTTGGACCTGATCAATTATCAACTGCTGCCAAGTTTCGGGTTAGGACAATGGCTGCTCACTTGCCCAGATTAGTGGTTGGTGAGTCCCATTTAGATAACCCGGTTTTCAAGTGTGACCGCCGTGCGCCGGCGGCCAGGAATAGCAGTACTATATGTTTAAACACGGGTTTGAGGAATGGTGGAAAAGTGATCATGAGTTTGAGAAACCATCAGCAGCCAGACGGTGGTGTGATTTGTGGATATTTTATTTATAATGCTGCCAAGACTTGGTGCAATTCTCAGCCTTGCATGCAGTCCGGGTCTGGAGATTTCCATAGTTTGTCAACCTCGTGTTACTCTGCTGGGCCTGCTCATGATGTGCCATTTGACACTTGTGCCCGTGAGGAACAGTTAAGAAGCTCTGCAGATTCATCTGAACTGAAAACTCCTTCACGAAAGACCCTTAAGTTAATATCAGGATCATGCTACTTGCCTCATCCGGATAAAGAAGAAACTGGTGGAGAAGATGCTCATTTTATATGTTCTGAGGAACAAGCAGTAGGGGTGGCAGATGGGGTTGGTGGCTGGGCAGATCTTGGTGTTGATGCTGGATATTACTCTCGTGAGCTCATGTCCAAATCAGTGGAAGCTATTCAGGAAGAACCCAAAGGTTCAATTGATCCAGCTAGGGTGCTGGAAAAAGCACATTCAAGTACAAAAGCTAAGGGTTCCTCTACAGCATGCATCATTGCACTTACTGAACAGGGCCTTAATGCTATCAATTTGGGAGACAGTGGATTTATGGTGGTCCGGGATGGGTGTACTGTATTCCGGTCCCCAGTGCAGCAACATGATTTCAATTTCACGTATCAGCTGGAATGTGGTAGTAATGGTGATTTACCTAGTTCTGGTCAGGTTTTTACCATTCCCGTTGCACCCGGGGATGTCATAGTTGCTGGTACGGATGGGCTGTTTGATAACTTGTACAACAACGAGATTACGGCAGTGGTGGTTCATGCCATGAGAGCCGGCTTAAGCCCTCAGGTGACAGCGCAGAAGATAGCTGCATTGGCTCGTCAACGGGCACTGGACAAAGATAGGCAGACTCCTTTCTCAACTGCTGCTCAAGATGCTGGTTTTCGTTACTATGGTGGCAAGCTTGATGATACCACAGTTGTAGTTTCATATATTACAGGCTCTGGAGATGCTTAA 1446 0.4633 MVRNKMPSNYFSRLGASIKRSVVGKEAAEVLIAQGKFSRFFHSLHSSYCVELGGKRRTLSVVDTLSRTFSVPSIQVCGYHIGGTLVGPDQLSTAAKFRVRTMAAHLPRLVVGESHLDNPVFKCDRRAPAARNSSTICLNTGLRNGGKVIMSLRNHQQPDGGVICGYFIYNAAKTWCNSQPCMQSGSGDFHSLSTSCYSAGPAHDVPFDTCAREEQLRSSADSSELKTPSRKTLKLISGSCYLPHPDKEETGGEDAHFICSEEQAVGVADGVGGWADLGVDAGYYSRELMSKSVEAIQEEPKGSIDPARVLEKAHSSTKAKGSSTACIIALTEQGLNAINLGDSGFMVVRDGCTVFRSPVQQHDFNFTYQLECGSNGDLPSSGQVFTIPVAPGDVIVAGTDGLFDNLYNNEITAVVVHAMRAGLSPQVTAQKIAALARQRALDKDRQTPFSTAAQDAGFRYYGGKLDDTTVVVSYITGSGDA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00256 481 SMART PP2C_4 226 473 IPR001932 -
Cca05g00256 481 PANTHER PROTEIN PHOSPHATASE 2C 70 480 IPR039123 -
Cca05g00256 481 ProSiteProfiles PPM-type phosphatase domain profile. 236 475 IPR001932 -
Cca05g00256 481 Gene3D - 378 478 IPR036457 -
Cca05g00256 481 SUPERFAMILY PP2C-like 240 472 IPR036457 -
Cca05g00256 481 Gene3D - 246 368 IPR036457 -
Cca05g00256 481 SMART PP2C_SIG_2 248 475 IPR001932 -
Cca05g00256 481 Pfam Stage II sporulation protein E (SpoIIE) 264 473 IPR001932 -
Cca05g00256 481 PANTHER PROTEIN PHOSPHATASE 70 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00256 Cca-Chr5 5494996 5499778 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00256 05 5494996 5499778 Cca05g00256 05 5494996 5499778 ECH