Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00252 ATGGCCTCCGACGGAGCAACTTCGGCGGCGACGAGCCGGAGAAAGCCGTCGTGgagagagagggagaacaacagaaggagagagagaagaagaagagcgatagCGGCCAAAATATACTCCGGACTTCGAGCTCAGGGAAACTATAACTTGCCGAAGCACTGTGACAACAACGAAGTTCTCAAAGCTCTCTGTGCAGAAGCTGGTTGGTGCGTCGAAGAAGACGGCACTACCTATCGCAAGGGTTGCAAGCCACCTCTGGCCAATGGTGCAGGGAGCTCCATGAGAAGCATTCCCTTTTCTTCTTCACAAAATCCAAGTCCTCTTTCTTCGTCATTTCCCAGCCCAATTCCTTCATACCAAGTGAGCCCTTCCTCCTCCACTTTCCCGAGCCCATTTCGTTTAGACGGGGATAAGGACAATGTTTCAAATCTCATTCCATACATTCGCAATGCATCCCTGTCTCTTCCTCCTCTAAGGATATCAAACAGTGCCCCTGTGACACCGCCTCTTTCGTCACCAACTTCTAGAAATCCGAAACCAATTCCTACATGGGAGTCCATTGCCAAAGAATCCATGGCCTCCTTCAATTACCCTTTCTTTGCAGCTTCTGCCCCTGCTAGCCCCACACACCGGCAGCTTTACACCCCAGCCACTATTCCAGAATGTGACGAGTCAGACACTTCCACCGGTGAGTCTAGCCAGTGGATGAAATTCCAAGCATTTGCCCCTTCTGCATCTGTACTGCCAACTTCTCCAACCTTTAATCTTGTTAAACCCATGGTTCCGCACAATGTGCCTGATAACTCAATCCAAGAGATGAGAACGAGTTCAGAAGAGTTTGGGGTACAGGTAAAACCTTGGGTTGGTGAAAAAATTCATGAAGTGGCATTGGATGATTTGGAGCTCACACTTGGAAGTGGGAAGGTGCGAAGTTAG 936 0.469 MASDGATSAATSRRKPSWRERENNRRRERRRRAIAAKIYSGLRAQGNYNLPKHCDNNEVLKALCAEAGWCVEEDGTTYRKGCKPPLANGAGSSMRSIPFSSSQNPSPLSSSFPSPIPSYQVSPSSSTFPSPFRLDGDKDNVSNLIPYIRNASLSLPPLRISNSAPVTPPLSSPTSRNPKPIPTWESIAKESMASFNYPFFAASAPASPTHRQLYTPATIPECDESDTSTGESSQWMKFQAFAPSASVLPTSPTFNLVKPMVPHNVPDNSIQEMRTSSEEFGVQVKPWVGEKIHEVALDDLELTLGSGKVRS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00252 311 MobiDBLite consensus disorder prediction 14 29 - -
Cca05g00252 311 MobiDBLite consensus disorder prediction 1 31 - -
Cca05g00252 311 MobiDBLite consensus disorder prediction 93 131 - -
Cca05g00252 311 MobiDBLite consensus disorder prediction 162 181 - -
Cca05g00252 311 MobiDBLite consensus disorder prediction 89 133 - -
Cca05g00252 311 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 310 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cca05g00252 311 Pfam BES1/BZR1 plant transcription factor, N-terminal 12 151 IPR008540 -
Cca05g00252 311 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00252 Cca-Chr5 5431105 5432888 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Cca05g00252 BES1_N 2.7e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00252 05 5431105 5432888 Cca05g00252 05 5431105 5432888 ECH
Cca05g00252 05 5431105 5432888 Cca07g00379 07 4912728 4914544 PCT